Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,361,060 – 13,361,164 |
Length | 104 |
Max. P | 0.893326 |
Location | 13,361,060 – 13,361,164 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 71.05 |
Mean single sequence MFE | -28.17 |
Consensus MFE | -13.78 |
Energy contribution | -12.35 |
Covariance contribution | -1.43 |
Combinations/Pair | 1.36 |
Mean z-score | -2.31 |
Structure conservation index | 0.49 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893326 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13361060 104 + 22224390 CCUUGCGAGUGUUUGUAUUCCCAUCUAGGCAUUCCUAAAGGAAUCCUUAGGAC-UUUAUACCGAAGGGUAUUGUGUGUGAGGAUUUGUGAGUAUCUGAAUAUCUG .((..(((((.((..(((.....((((((.(((((....))))).))))))((-...(((((....))))).)))))..)).)))))..)).............. ( -30.80) >DroSec_CAF1 6596 83 + 1 CCUCGAGGAUUUCUGG-GGACUAUCUAGGGAUUCC-----------UUAGGGUUUUUGUACUGAAGGUUA--GUGUGUGAGAAUUUGCGAGUAUC--------UG .(((((((((..((((-(.....)))))..).)))-----------)).(((((((..(((.........--..)))..)))))))..)))....--------.. ( -22.00) >DroSim_CAF1 6596 94 + 1 ACUCGAGGAUUUCUGA-GGACUAUCUAGGGAUUCCUUAAGGAAUCCUUAGGGUUUUUGUACUGAAGGUUA--GUGUGUGAGGAUUUGCGAGUAUC--------UG (((((..((((..(((-(((((..(((((((((((....)))))))))))))))))).((((((...)))--)))...)..))))..)))))...--------.. ( -31.70) >consensus CCUCGAGGAUUUCUGA_GGACUAUCUAGGGAUUCCU_AAGGAAUCCUUAGGGUUUUUGUACUGAAGGUUA__GUGUGUGAGGAUUUGCGAGUAUC________UG .((((.(((((((((..........)))))))))...............((((((((((((.............)))))))))))).)))).............. (-13.78 = -12.35 + -1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:27 2006