Locus 5115

Sequence ID X_DroMel_CAF1
Location 13,360,388 – 13,360,484
Length 96
Max. P 0.567387
window8316

overview

Window 6

Location 13,360,388 – 13,360,484
Length 96
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 90.37
Mean single sequence MFE -10.61
Consensus MFE -7.93
Energy contribution -9.18
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.75
SVM decision value 0.07
SVM RNA-class probability 0.567387
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13360388 96 + 22224390
GUUAGCUUUUCUAAAAAAAAAAAUAAACUAAUUUAGGACCAAAGGUUCCAACUUAGAAAAAUUAACACUUUCCCUAAACACAUCAUUUUAGAAAAU
(((((.((((((((......((((......)))).(((((...)))))....)))))))).))))).......(((((........)))))..... ( -13.50)
>DroSec_CAF1 5892 91 + 1
GUUAGCUUUUCUAAA-----AAAUAAACUAAUUUAGGACCAAAGGUUCCGACUUAUAAAAAUUAACACUUUCCCUAAACACAUCAUUUUAGAAAAU
......(((((((((-----(..........((((((...(((((((................))).)))).)))))).......)))))))))). ( -10.02)
>DroSim_CAF1 5894 91 + 1
GUUAGCUUUUCUAAA-----AAAUAAACUAAUUUAGGACCAAAGGUUCCAACUUAGAAAAAUUAACACUUUCCCUAAACACAUCAUUUUAGAAAAU
(((((.((((((((.-----((((......)))).(((((...)))))....)))))))).))))).......(((((........)))))..... ( -13.50)
>DroEre_CAF1 5278 88 + 1
GUUAGCUCUUCUAAA-----AA---AAUUAAUUCAGGACCCAAGGUUCCAGCUUAGAAAAAUGAACACUUUCCCUAAACACAUCAUCUUACAAAAU
(((.....((((((.-----..---..........(((((...)))))....)))))).....))).............................. (  -5.43)
>consensus
GUUAGCUUUUCUAAA_____AAAUAAACUAAUUUAGGACCAAAGGUUCCAACUUAGAAAAAUUAACACUUUCCCUAAACACAUCAUUUUAGAAAAU
(((((.((((((((.........((((....))))(((((...)))))....)))))))).))))).............................. ( -7.93 =  -9.18 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:26 2006