Locus 5114

Sequence ID X_DroMel_CAF1
Location 13,358,377 – 13,358,481
Length 104
Max. P 0.832597
window8315

overview

Window 5

Location 13,358,377 – 13,358,481
Length 104
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 87.07
Mean single sequence MFE -39.78
Consensus MFE -32.60
Energy contribution -33.80
Covariance contribution 1.20
Combinations/Pair 1.03
Mean z-score -2.39
Structure conservation index 0.82
SVM decision value 0.72
SVM RNA-class probability 0.832597
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13358377 104 + 22224390
---GAGCUGUUCCAGUUGUUGUAGCCGGCGGACCGCAAUUGCUGGCGACAUUUGCCGGACAUUCUACGGCUGCGACAGCGGCAUUUUCUGCUCAGAAAACAAUGCG----A
---((((.((.((.((((((((((((((((...)))...(((((((((...))))))).)).....))))))))))))))).)).....)))).............----. ( -41.00)
>DroSec_CAF1 3849 103 + 1
---GAGCUGUUCCAGUUGUUGUAGCCGGCGGACCGCAAUUGCUGGCGACAUUUGCCGGACAUUCUACGGCUGCGACAGCGGCAUUUUCAGCU-AGAAAACAAUGCG----C
---.(((((..((.((((((((((((((((...)))...(((((((((...))))))).)).....)))))))))))))))......)))))-.............----. ( -41.10)
>DroSim_CAF1 3828 103 + 1
---GAGCUGUUCCAGUUGUUGUAGCCGGCGGACCGCAAUUGCUGGCGACAUUUGCCGGACAUUCUACGGCUGCGACAGCGGCAUUUUCAGCU-AGAAAACAAUGAG----A
---.(((((..((.((((((((((((((((...)))...(((((((((...))))))).)).....)))))))))))))))......)))))-.............----. ( -41.10)
>DroEre_CAF1 3425 93 + 1
-------------AGUUGUUGUAGCCGGCGGAGCGCAAUUGCUGGCGACAUUUGCCGGACAUUCUACGGCUGCGACAGCGGCAUUUUCAGCU-GGAAAACAAUGCG----A
-------------.((((((((((((((((...)))...(((((((((...))))))).)).....))))))))))))).((((((((....-.)))...))))).----. ( -38.50)
>DroYak_CAF1 5714 106 + 1
UGCGAGCUGUUCCAGUUGUCGUAGCCGACGGACCGCAAUUGCUGGCGACAUUUGCCGGACAUUCUACGGCUGCGACAGCGGCAUUUUCAGCU-GGAAAACAAUGCG----A
.(((.....((((.(((((((((((((..(((((((....)).(((((...)))))))....))).)))))))))))))(((.......)))-)))).....))).----. ( -41.90)
>DroAna_CAF1 4052 100 + 1
---AGCCUGUUCCAGUUGUU---GCCGCCGGACCGCAAUUGCUGGCGACAUUUGCCGGACAUUU----GCAGAGACAGCGGCAUUUUCUGGU-CGAAAACAAUGCGAGAGA
---.((.((((((((....(---(((((.(..(.((((.(((((((((...))))))).)).))----)).)...).))))))....)))).-....))))..))...... ( -35.10)
>consensus
___GAGCUGUUCCAGUUGUUGUAGCCGGCGGACCGCAAUUGCUGGCGACAUUUGCCGGACAUUCUACGGCUGCGACAGCGGCAUUUUCAGCU_AGAAAACAAUGCG____A
..............((((((((((((((((...)))...(((((((((...))))))).)).....))))))))))))).((((((((......)))...)))))...... (-32.60 = -33.80 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:25 2006