Locus 5113

Sequence ID X_DroMel_CAF1
Location 13,356,825 – 13,356,919
Length 94
Max. P 0.662177
window8314

overview

Window 4

Location 13,356,825 – 13,356,919
Length 94
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 75.00
Mean single sequence MFE -42.15
Consensus MFE -26.96
Energy contribution -25.94
Covariance contribution -1.02
Combinations/Pair 1.41
Mean z-score -1.27
Structure conservation index 0.64
SVM decision value 0.27
SVM RNA-class probability 0.662177
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13356825 94 - 22224390
--------------CGAUGGCUCAUAGCCAAAGGUGGAGAAGAAUCGCGGUGGCGGGGGCGGCAUCAUCAUGGCCCCGCCCCCAGCGCCACCACCAACGCCCAGCGAU
--------------((.((((.....))))..((((((......))..((((((((((((((..((.....))..))))))))...)))))).....))))...)).. ( -42.40)
>DroVir_CAF1 2719 99 - 1
AGGCCCGGUGCCGUGCCCUGCUCAUAGCCGAAUGUGGAAAAGAACCGCGGCGGCGGCGGCGGCAUGGC------AGCGCCCGCUGCGCUGCCAC---CGCCCAGCGAU
.(((..(.((((((((((((((....((((..(((((.......))))).))))))))).))))))))------).))))(((((.((......---.)).))))).. ( -50.90)
>DroPse_CAF1 9403 88 - 1
GGG-----------CGCCGGCUCGUAGCCGAAUGUGGAGAAGAACCGUGGUGGAGGCGGCGGCAUCAU------ACCGCCCGCAACGCUGCCACC---ACCCAGCGAG
...-----------(((((((.....))))....(((.(......)(((((((.(((((((((.....------...).))))..)))).)))))---)))))))).. ( -35.70)
>DroSec_CAF1 2351 94 - 1
--------------CGAUGGCUCAUAGCCGAAGGUGGAGAAGAAGCGCGGUGGCGGGGGCGGCAUCAUCAUGGCCCCGCCCCCAGCGCCACCACCAACGCCCAGCGAU
--------------...((((.....))))..(((((.(.....((((((.(((((((.((.........)).))))))).)).))))).)))))..(((...))).. ( -42.50)
>DroEre_CAF1 2010 94 - 1
--------------CGAUGGCUCAUAGCCAAAGGUGGAGAAGAAGCGCGGUGGCGGGGGCGGCAUCAUCAUGGCCCCGCCCCCAGUGCCGCCACCGCCGCCCAGCGAG
--------------((.((((((...(((...))).))).....((((((((((((((((((..((.....))..))))))))......))))))).)))))).)).. ( -45.70)
>DroPer_CAF1 9592 88 - 1
GGG-----------CGCCGGCUCGUAGCCGAAAGUGGAGAAGAACCGUGGUGGAGGCGGCGGCAUCAU------ACCGCCCGCAACGCUGCCACC---ACCCAGCGAG
...-----------(((((((.....))))....(((.(......)(((((((.(((((((((.....------...).))))..)))).)))))---)))))))).. ( -35.70)
>consensus
______________CGACGGCUCAUAGCCGAAGGUGGAGAAGAACCGCGGUGGCGGCGGCGGCAUCAU______ACCGCCCCCAGCGCCGCCACC__CGCCCAGCGAG
.................((((.....))))...((((.......))))((((((((((((((.............))).))))..)))))))................ (-26.96 = -25.94 +  -1.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:24 2006