Locus 5112

Sequence ID X_DroMel_CAF1
Location 13,352,697 – 13,352,791
Length 94
Max. P 0.573676
window8313

overview

Window 3

Location 13,352,697 – 13,352,791
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 87.73
Mean single sequence MFE -35.52
Consensus MFE -26.75
Energy contribution -28.12
Covariance contribution 1.36
Combinations/Pair 1.21
Mean z-score -2.70
Structure conservation index 0.75
SVM decision value 0.08
SVM RNA-class probability 0.573676
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13352697 94 + 22224390
GUGGCAGAGAGGUGGCUACUAGCUCCUCAAACUCCAUGGAACUGGACAUGGUUCUAACACCGCCACCGCCACCAACACUGGGCAAGCCCAAGUC
(((((.....((((((..((((.(((...........))).))))....(((......))))))))))))))......((((....)))).... ( -33.60)
>DroSec_CAF1 14380 94 + 1
GUGGCGGAGAGGUGGCUACUAGCUCCUCAACCUCCAUGGAGUUGGACAUGGUUCUAACACCGCCACCGCCACCAACACUAAGCAAGCCCAAGUC
.(((.((...((((((..((((((((...........))))))))....(((......))))))))).)).))).................... ( -33.20)
>DroSim_CAF1 17595 94 + 1
GUGGCGGAGAGGUGGCUACUAGCUCCUCAACCUCCAUGGAGCUGGACAUGGUUCUAACACCGCCACCGCCACCAACACUGGGCAAGCCCAAGUC
.(((.((...((((((..((((((((...........))))))))....(((......))))))))).)).)))....((((....)))).... ( -41.50)
>DroEre_CAF1 13330 94 + 1
GUGGCGGAAUGGUGGCUACUAGCUCCUCCACCUCCAUGGAGCUGGACAUGGUUCUAACACCGCCACCGCCACCAACACUGGCCAAGCCCAAGUC
(.(((.....((((((..((((((((...........))))))))....(((......)))))))))((((.......))))...))))..... ( -37.60)
>DroYak_CAF1 19640 94 + 1
GUGGCGGAACGGUGGCCACUAGCUCCUCCGCCUCCAUGGAGCUGGACAUGGUUCUAACACCGCCACCGCCACCAACACUGGCCAAGCCCAAGUC
(((((((..(((((((((((((((((...........))))))))...)))).....)))))...)))))))....((((((...)))..))). ( -38.60)
>DroAna_CAF1 15430 94 + 1
GCGCCGGAACGAUGGCCAACAGCUCGUCCACUUCCAUGGAACUGGACAUAAUACUGACGCCACCGCCGCCCCCAUCGCUGGGCAAGCUCAAGUC
((...((..((.((((...(((...(((((.(((....))).)))))......)))..)))).))))((((........))))..))....... ( -28.60)
>consensus
GUGGCGGAAAGGUGGCUACUAGCUCCUCAACCUCCAUGGAGCUGGACAUGGUUCUAACACCGCCACCGCCACCAACACUGGGCAAGCCCAAGUC
(((((((...(((((...((((((((...........))))))))...((.......))))))).)))))))....((((((....))).))). (-26.75 = -28.12 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:24 2006