Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,473,546 – 1,473,671 |
Length | 125 |
Max. P | 0.916762 |
Location | 1,473,546 – 1,473,640 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 81.37 |
Mean single sequence MFE | -21.50 |
Consensus MFE | -13.29 |
Energy contribution | -13.86 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.07 |
Mean z-score | -1.87 |
Structure conservation index | 0.62 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644117 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1473546 94 + 22224390 A---------CAUUGCGCAAAAUGGUCUAUAAAAUUAAUGAGCUGGCCACGCACAU---ACACAUGUGCACAAU----CGUACACACGAACGCCUAUGUAAACGCAUCUC (---------(((.(((.....(((((.................))))).((((((---....))))))....(----(((....)))).)))..))))........... ( -19.73) >DroSec_CAF1 8935 94 + 1 A---------CAUUGCGCAAAAUGGUCUAUAAAAUUAAUGAGCUGGCCACGCACAU---ACACAUGUGCACAUU----CGUACACACGAACGCCUAUGUAAACGCAUCUC (---------(((.(((.....(((((.................))))).((((((---....))))))...((----(((....))))))))..))))........... ( -20.33) >DroEre_CAF1 10068 98 + 1 A---------CAUUGCGCAAAAUGGUCUAUAAAAUUAAUGAGCUGGCCACGCACAU---ACACAUGUGCACAUUUGUACGUACAGACGAACGCCUAUGUAAACGCAUCUC .---------...((((.....(((((.................))))).((((((---....))))))((((.(((.(((....))).)))...))))...)))).... ( -20.93) >DroAna_CAF1 13017 106 + 1 AGUGUGUGUGUGUUGCGCAAAAUGGUCUAUAAAAUUAAUGAGCUGGCCACGCACACUCAAUACAAGCGCAAAAA----AGCGCAAAAAAAAAAACAUGUAAAUGCAUCUC ((((((((((.(((((.((...................)).)).)))))))))))))........((((.....----.))))............((((....))))... ( -25.01) >consensus A_________CAUUGCGCAAAAUGGUCUAUAAAAUUAAUGAGCUGGCCACGCACAU___ACACAUGUGCACAAU____CGUACACACGAACGCCUAUGUAAACGCAUCUC .............((((.....(((((.................))))).((((((.......)))))).................................)))).... (-13.29 = -13.86 + 0.56)
Location | 1,473,577 – 1,473,671 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 95.17 |
Mean single sequence MFE | -27.23 |
Consensus MFE | -25.37 |
Energy contribution | -25.37 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.30 |
Structure conservation index | 0.93 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1473577 94 + 22224390 AGCUGGCCACGCACAUACACAUGUGCACAAU----CGUACACACGAACGCCUAUGUAAACGCAUCUCCAUAUCAAUAUGUGCGAUGCGAAUGGAAACG .((.(((...((((((....))))))....(----(((....))))..)))...))...((((((.(((((....)))).).))))))...(....). ( -28.00) >DroSec_CAF1 8966 94 + 1 AGCUGGCCACGCACAUACACAUGUGCACAUU----CGUACACACGAACGCCUAUGUAAACGCAUCUCCAUAUCAAUAUGUGCGAUGCGAAUGGGAACG .((.(((...((((((....))))))...((----(((....))))).)))...))...((((((.(((((....)))).).)))))).......... ( -27.10) >DroEre_CAF1 10099 98 + 1 AGCUGGCCACGCACAUACACAUGUGCACAUUUGUACGUACAGACGAACGCCUAUGUAAACGCAUCUCCAUAUCAAUAUGUGCGAUGCGAAUGGGAACG .((.(((...((((((....))))))......((.(((....))).)))))...))...((((((.(((((....)))).).)))))).......... ( -26.60) >consensus AGCUGGCCACGCACAUACACAUGUGCACAUU____CGUACACACGAACGCCUAUGUAAACGCAUCUCCAUAUCAAUAUGUGCGAUGCGAAUGGGAACG .((.(((...((((((....)))))).........(((....)))...)))...))...((((((.(((((....)))).).))))))...(....). (-25.37 = -25.37 + -0.00)
Location | 1,473,577 – 1,473,671 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 95.17 |
Mean single sequence MFE | -30.55 |
Consensus MFE | -29.23 |
Energy contribution | -29.57 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.67 |
Structure conservation index | 0.96 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698836 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1473577 94 - 22224390 CGUUUCCAUUCGCAUCGCACAUAUUGAUAUGGAGAUGCGUUUACAUAGGCGUUCGUGUGUACG----AUUGUGCACAUGUGUAUGUGCGUGGCCAGCU .(((.((((.((((((...((((....))))..))))))..((((((.((....((((((((.----...)))))))))).)))))).))))..))). ( -30.60) >DroSec_CAF1 8966 94 - 1 CGUUCCCAUUCGCAUCGCACAUAUUGAUAUGGAGAUGCGUUUACAUAGGCGUUCGUGUGUACG----AAUGUGCACAUGUGUAUGUGCGUGGCCAGCU .(((.((((.((((((...((((....))))..))))))..((((((.((....((((((((.----...)))))))))).)))))).))))..))). ( -30.30) >DroEre_CAF1 10099 98 - 1 CGUUCCCAUUCGCAUCGCACAUAUUGAUAUGGAGAUGCGUUUACAUAGGCGUUCGUCUGUACGUACAAAUGUGCACAUGUGUAUGUGCGUGGCCAGCU .(((......((((((...((((....))))..))))))........)))(((.(((((((((((((.(((....))).)))))))))).))).))). ( -30.74) >consensus CGUUCCCAUUCGCAUCGCACAUAUUGAUAUGGAGAUGCGUUUACAUAGGCGUUCGUGUGUACG____AAUGUGCACAUGUGUAUGUGCGUGGCCAGCU .(((.((((.((((((...((((....))))..))))))..((((((.((....(((((((((......))))))))))).)))))).))))..))). (-29.23 = -29.57 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:25 2006