Locus 5109

Sequence ID X_DroMel_CAF1
Location 13,336,673 – 13,336,765
Length 92
Max. P 0.794259
window8308

overview

Window 8

Location 13,336,673 – 13,336,765
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 85.65
Mean single sequence MFE -25.33
Consensus MFE -17.56
Energy contribution -18.12
Covariance contribution 0.56
Combinations/Pair 1.16
Mean z-score -2.14
Structure conservation index 0.69
SVM decision value 0.60
SVM RNA-class probability 0.794259
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13336673 92 + 22224390
CGCCAAAGUACAAAGGAAUGCCCAAAAAUCCUGGGGGCAAUCCGGUGCUAAGCUUGCCCCAAAUCCCGGCGAGCUACCAACCAUACCCCCAU
......(((((...(((.(((((..(.....)..))))).))).))))).((((((((.........))))))))................. ( -30.80)
>DroPse_CAF1 100176 89 + 1
CGA-AAAGUACAAAGGCAUGACCGA-AAUCCUUGGGGCAAUCCGGUGUUAAGCUCACCCCAAAUCCCGAUGUGGCACUGGCC-UCCCCCCCU
...-........((((.((......-.))))))((((....(((((((((...((............))..)))))))))..-..))))... ( -20.10)
>DroSec_CAF1 49077 91 + 1
UGC-AAAGUACAAAGGAAUGCCCAAAAAUCCUGAGGGCAAUCCGGUGCUAAGCUUGGCCCAAAUCCCAGCGAGCUACCAUCCAUACCCCCAU
.((-..(((((...(((.(((((...........))))).))).)))))..(((.((.......)).)))..)).................. ( -24.90)
>DroEre_CAF1 40394 91 + 1
CGC-AAAGUACAAAGGAAUGGCCAAAAAUCCUGGGGGCAAUCCGGUGCUAAGCUUGCCCCAAAUCCCGCCGAGCUACCAUCCAUACCCCCAU
...-.........((((.(.......).))))(((((......((((((..((..............))..))).))).......))))).. ( -20.06)
>DroYak_CAF1 40514 85 + 1
CGC-AAAGUACAAAGGAAUGCCCAAAAAUCCUGGGGGCAAUCCGGUGCUAAGCUUGCCCCAAAUCCCGGCGAGCUAC------UACCUCCAU
...-..(((((...(((.(((((..(.....)..))))).))).))))).((((((((.........))))))))..------......... ( -30.80)
>consensus
CGC_AAAGUACAAAGGAAUGCCCAAAAAUCCUGGGGGCAAUCCGGUGCUAAGCUUGCCCCAAAUCCCGGCGAGCUACCAUCCAUACCCCCAU
......(((((...(((.(((((...........))))).))).))))).((((((.............))))))................. (-17.56 = -18.12 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:19 2006