| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,335,021 – 13,335,113 |
| Length | 92 |
| Max. P | 0.567066 |
| Location | 13,335,021 – 13,335,113 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 76.31 |
| Mean single sequence MFE | -31.78 |
| Consensus MFE | -16.78 |
| Energy contribution | -17.28 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.567066 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13335021 92 + 22224390 AUUGAACUUCAGCGCGGCAGUGAUAAAAUUGCC--------A-UCGC-----UUGGCUGGCAGAAUGCAGUC-GGUGGC--GUAUACGUAAUAUCGGUGGCGUAUACGC ..........((((.((((((......))))))--------.-.)))-----)..((((((........)))-))).((--((((((((.((....)).)))))))))) ( -32.40) >DroSec_CAF1 47455 92 + 1 AUUGAACUUCAGCGCGGCAGUGAUAAAAUUGCC--------A-UCGC-----CGGGCUGGUAGAAUGCAGUC-GGUGGC--GUAUACGUAAUAUCGGUGACGUAUACGC ...............((((((......))))))--------.-.(((-----(((.(((........)))))-))))((--((((((((.((....)).)))))))))) ( -33.20) >DroSim_CAF1 40478 92 + 1 AUUGAACUUCAGCGCGGCAGUGAUAAAAUUGCC--------A-UCGC-----CGGGCUGGUAGAAUGCAGUC-GGUGGC--GUAUACGUAAUAUCGGUGGCGUAUACGC ...............((((((......))))))--------.-.(((-----(((.(((........)))))-))))((--((((((((.((....)).)))))))))) ( -33.50) >DroEre_CAF1 38853 92 + 1 AUUGAACUCCAGCGCGGCAGUGAUAAAAUUGCC--------A-UGGC-----AGGGCUGAUAGAAUGCAGUC-GGUGGC--GUAUACGUAGUAUCGGUGGCGUAUACGC ......(.((.((..((((((......))))))--------.-..))-----..(((((........)))))-)).)((--((((((((..........)))))))))) ( -31.10) >DroYak_CAF1 39032 93 + 1 AUUGAGCUCCAGCGGGGCAGUGAUAAAAUUGCC--------AACGCC-----AAGGCUGGUAGAGUGCAGUC-GGUGGC--GUAUACGCAAUAUCGAUGGCGUAUACGC ......(.((.(((.((((((......))))))--------..))).-----..(((((........)))))-)).)((--((((((((.((....)).)))))))))) ( -35.00) >DroPer_CAF1 98843 98 + 1 GCUGCGUUUUA---CAACACUGUCAAA-UUGGGUUUGGAGUA-CCGCGGUAGAGCGCUGGGAGAGAGCUGGGAGCUGCCGGAUAUAUGUA-UA-----CGCGUAUACGC ...((((..((---((....((((...-...(((.......)-)).((((((..(.(..(.......)..))..))))))))))..))))-.)-----)))........ ( -25.50) >consensus AUUGAACUUCAGCGCGGCAGUGAUAAAAUUGCC________A_UCGC_____AGGGCUGGUAGAAUGCAGUC_GGUGGC__GUAUACGUAAUAUCGGUGGCGUAUACGC ........(((.(..((((((......)))))).....................(((((........))))).).)))...((((((((..........)))))))).. (-16.78 = -17.28 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:18 2006