| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,331,131 – 13,331,231 |
| Length | 100 |
| Max. P | 0.995455 |
| Location | 13,331,131 – 13,331,231 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 74.74 |
| Mean single sequence MFE | -24.87 |
| Consensus MFE | -19.84 |
| Energy contribution | -20.07 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.80 |
| SVM decision value | 2.58 |
| SVM RNA-class probability | 0.995455 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13331131 100 + 22224390 ACCCAGCUAACCAGCUACCCAACAUCCCAACUCCCAGCUUCCCAGUUUCCAUUUCCCUGGGCUCCAUAAUACGAUGCCUCGAUUGGGGAAUUGGUAUGGA ....((((....))))......(((.((((.((((.....(((((...........))))).....((((.(((....))))))))))).)))).))).. ( -24.80) >DroEre_CAF1 35113 85 + 1 UCCCAGCUUGCCAGCUACC---------------CAGCUACCCAGCUUCCAUUUCCCCGGGCUCCAUAAUACGCUGCCUCGAUUGGGGGAUUGGAAUGGA ..((((((.(..((((...---------------.))))..).)))(((((.((((((((((..(.......)..)))).....)))))).)))))))). ( -29.00) >DroYak_CAF1 35160 75 + 1 UCCCAGCUCGCAA------------------------CU-CCCAGUUUCCAUUUCCCCGGGCUCCAUAAUACGAUGCCUCGAUUGGGGGAUUGGAAUGAA .............------------------------..-......(((((.((((((((((((........)).)))).....)))))).))))).... ( -20.80) >consensus UCCCAGCUAGCCAGCUACC_______________CAGCU_CCCAGUUUCCAUUUCCCCGGGCUCCAUAAUACGAUGCCUCGAUUGGGGGAUUGGAAUGGA .........................................(((...((((.((((((((((..(.......)..)))).....)))))).)))).))). (-19.84 = -20.07 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:16 2006