| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,325,471 – 13,325,578 |
| Length | 107 |
| Max. P | 0.741697 |
| Location | 13,325,471 – 13,325,578 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 87.81 |
| Mean single sequence MFE | -22.30 |
| Consensus MFE | -14.85 |
| Energy contribution | -14.60 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.741697 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13325471 107 - 22224390 AAUGUAAACACAGGCUUAACAAUUGACAAAGCUUAAAAAGCAAUUGAUUGAGGUAAAAUUAAGCCAAAGCAAUAAUUCAUUAUGGGUUAUUGUAUGGACACAAGUAA ..(((...((..(((((((((((..(....(((.....)))..)..))))........)))))))...((((((((((.....)))))))))).)).)))....... ( -22.20) >DroSec_CAF1 38087 107 - 1 AAUGUAAACACAGGCUUAACAAUUGACAGAGCUUAAAAAGCAAUUGAUUGAGGUAAAAUUAAGCCAAAGCAAUAAUUCAUAAUGGGUUAUUGUAUGGGCACAAGUAC ..(((.........(((((((((((.(............))))))).)))))..........(((...((((((((((.....))))))))))...))))))..... ( -22.90) >DroEre_CAF1 29442 105 - 1 AUUGCAAACACAAGCUUAGCUAUUGACAGAGCUUAAAAAGCAAUUGAGUGAGGUAAAAUUAAGCCGAAGCAAUAAUUCAUUAUGGGUGAUUGCAUUGAC--AAAUAC ..(((((.(((..((((((((........))))....)))).((((.....(((........)))....))))............))).))))).....--...... ( -20.00) >DroYak_CAF1 29136 105 - 1 AUUGUAAACACAAGCUUAACUAUUGACAGAGCUUAAAAAGCAAUUGAUUGAGGUAAAAAUAAGCCAAUGCAAUAAUUUAUUAUGGGUGCUUGUGUUGGC--AAACAC .((((.(((((((((....((((.......(((.....))).((((.....(((........)))....))))........))))..))))))))).))--)).... ( -24.10) >consensus AAUGUAAACACAAGCUUAACAAUUGACAGAGCUUAAAAAGCAAUUGAUUGAGGUAAAAUUAAGCCAAAGCAAUAAUUCAUUAUGGGUGAUUGUAUGGAC__AAAUAC ..(((......((((((...........)))))).....))).........(((........)))...((((((((((.....)))))))))).............. (-14.85 = -14.60 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:12 2006