Locus 5101

Sequence ID X_DroMel_CAF1
Location 13,323,041 – 13,323,140
Length 99
Max. P 0.780157
window8297

overview

Window 7

Location 13,323,041 – 13,323,140
Length 99
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.53
Mean single sequence MFE -22.23
Consensus MFE -9.73
Energy contribution -9.03
Covariance contribution -0.69
Combinations/Pair 1.27
Mean z-score -2.21
Structure conservation index 0.44
SVM decision value 0.55
SVM RNA-class probability 0.780157
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13323041 99 + 22224390
CUCAAUUUGCCUGUCGCAAUCCAAUUGUCGGGCAUUUCAUUUCAAUUUAACAAUUUUGAAAUC-CCUCC---CAUCCAACGGAAGCG--AACUGCAAGUUGCCGU---------------
..((((((((...((((............(((.((((((.................)))))))-))(((---........))).)))--)...))))))))....--------------- ( -25.33)
>DroVir_CAF1 74729 88 + 1
CUCCAUUUGCUUGGCGCAAUUCAAUUGUCGGGCAUUUCAUUUCAAUUUAACAAUUUCGAAAAUUUUUUG---CCGC-GACGGAAAAG-----UGCAA-----------------------
.............((((..(((....((((((((.....((((..............))))......))---)).)-))).)))..)-----)))..----------------------- ( -18.44)
>DroPse_CAF1 84604 101 + 1
CUCAAUUUGCCUGUCACAAUUCAAUUGUCAGGCAUUUCAUUUCAAUUUAACAAUUUUGUAUUU-UCUUCUUCCCAC-AGCGGAAGCU--ACUUGCAACUUGCUGU---------------
.......((((((..(((((...))))))))))).............................-..........((-(((((..((.--....))..).))))))--------------- ( -18.70)
>DroYak_CAF1 26969 102 + 1
CUCAAUUUGCCUGUCGCAAUCCAAUUGUCGGGCAUUUCAUUUCAAUUUAACAAUUUUGAAAUC-CCACCC-CCAUC-AACGGAAGCGGUAGCUGCAAGUUGCCGU---------------
..((((((((((..(((..(((..(((..(((......(((((((..........))))))).-.....)-))..)-)).))).)))..))..))))))))....--------------- ( -27.70)
>DroAna_CAF1 11847 113 + 1
CUCAAUUUGCUUGUCGCAAUCCAAUUGUCAGGCAUUUCAUUUCAAUUUAACAAUUUUGAAAUU-UGUCC---CCGC-AACGGAAGCA--AGUUGCAACUUGCUGUUACUUGUUGUUGUUG
.......((((((..(((((...)))))))))))....(((((((..........))))))).-.....---...(-(((((.((((--(((.(((......))).))))))).)))))) ( -24.50)
>DroPer_CAF1 84569 100 + 1
CUCAAUUUGCCUGUCACAAUUCAAUUGUCAGGCAUUUCAUUUCAAUUUAACAAUUUUGUAUU--UCUUCUUCCCAC-AGCGGAAGCU--ACUUGCAACUUGCUGU---------------
.......((((((..(((((...)))))))))))............................--..........((-(((((..((.--....))..).))))))--------------- ( -18.70)
>consensus
CUCAAUUUGCCUGUCGCAAUCCAAUUGUCAGGCAUUUCAUUUCAAUUUAACAAUUUUGAAAUU_UCUCC___CCAC_AACGGAAGCG__ACUUGCAACUUGCUGU_______________
.......((((((..(((((...)))))))))))...................................................................................... ( -9.73 =  -9.03 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:09 2006