Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,473,258 – 1,473,350 |
Length | 92 |
Max. P | 0.917447 |
Location | 1,473,258 – 1,473,350 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 85.00 |
Mean single sequence MFE | -33.37 |
Consensus MFE | -24.22 |
Energy contribution | -26.00 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.04 |
Mean z-score | -2.76 |
Structure conservation index | 0.73 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917447 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1473258 92 + 22224390 AUAUGGUAACAGGAAGGGGAAGAGAGCGGGAGAACGGGUGAUUGGGAGAACGGUUGAACGAGAGGGGGGAGCCCUAGCUCUCU--CUCUCGUGG ...............(((..(((((((.......((..((((((......))))))..))...((((....)))).)))))))--..))).... ( -31.30) >DroSec_CAF1 8647 92 + 1 AUAUGGCAACAGGAAGGGGUAGAGAGCGGGAGAACGGGUGAUCGGGAGAACGGUUGAACGGGAGGGGGGAGCCCUAGCUCUCU--CUCUCGCGG ...((....)).(..((((.(((((((.......((..((((((......))))))..))...((((....)))).)))))))--))))..).. ( -34.60) >DroEre_CAF1 9783 87 + 1 AUAUGGCAACAGGAAGGGGAAGAGAGCGGGAGAACCGUCGAUCAGGGGAACGG-------GAGGGGGGGAGCCCUAGCUCUCUCUCUCUCGCGG ...((....))..........((..((((.....))))...)).......(((-------((((((((((((....)))))))))))))))... ( -34.20) >consensus AUAUGGCAACAGGAAGGGGAAGAGAGCGGGAGAACGGGUGAUCGGGAGAACGGUUGAACGGGAGGGGGGAGCCCUAGCUCUCU__CUCUCGCGG ...((....)).((.(((..(((((((.......((..((((((......))))))..))...((((....)))).)))))))..))))).... (-24.22 = -26.00 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:22 2006