| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,317,270 – 13,317,365 |
| Length | 95 |
| Max. P | 0.946500 |
| Location | 13,317,270 – 13,317,365 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 86.08 |
| Mean single sequence MFE | -20.95 |
| Consensus MFE | -18.24 |
| Energy contribution | -18.35 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.946500 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13317270 95 + 22224390 AUGAAGUGCGUGUCUGCACUGGAAAAAAGUUCGAGCUACUCUCGAAACUAAGUGCCAUAUAUGCAACGUACAAAAAAAACAUUUAAAUAAUUACG----------- .....((((((...((((.(((.....((((((((.....)))).)))).....)))....))))))))))........................----------- ( -19.80) >DroSec_CAF1 29916 104 + 1 AUGAAGUGCGUGUCUGCACUGGAAAAAAGUUCGAGCUACUCUCGAAAUUAAGUGCAAUAUAUGCAACGUACAAA--AAACAUUUAAAUAUUUACGAAAUAUUUAUA (((...(((((((.((((((.........((((((.....))))))....))))))..))))))).))).....--.......((((((((.....)))))))).. ( -22.72) >DroSim_CAF1 22683 104 + 1 AUGAAGUGCGUGUCUGCACUGGAAAAAAGUUCGAACUACUCUCGAAACUAAGUGCAAUAUACGCAACUAACAAA--AAACAUUUAAAUAAUUACACAAUAUGUAUA ....(((((((((.((((((.........(((((.......)))))....))))))..)))))).)))......--...............((((.....)))).. ( -20.32) >consensus AUGAAGUGCGUGUCUGCACUGGAAAAAAGUUCGAGCUACUCUCGAAACUAAGUGCAAUAUAUGCAACGUACAAA__AAACAUUUAAAUAAUUACG_AAUAU_UAUA ......(((((((..(((((.........((((((.....))))))....)))))...)))))))......................................... (-18.24 = -18.35 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:03 2006