Locus 5096

Sequence ID X_DroMel_CAF1
Location 13,316,504 – 13,316,594
Length 90
Max. P 0.534005
window8289

overview

Window 9

Location 13,316,504 – 13,316,594
Length 90
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 79.87
Mean single sequence MFE -22.97
Consensus MFE -12.52
Energy contribution -12.88
Covariance contribution 0.36
Combinations/Pair 1.19
Mean z-score -1.85
Structure conservation index 0.55
SVM decision value 0.00
SVM RNA-class probability 0.534005
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13316504 90 + 22224390
A-CAAAU---------U--GCAAUACAUUUGUCUGCAAUUUGCCAACACUUGAUGGGAUUAUCAUUUAU-UUUGGUGCUGACAU----------UUCGCCAGCG---GCGAA-AACU
.-(((((---------(--(((..((....)).))))))))).((.((((.(((((.....)))))...-...)))).))...(----------((((((...)---)))))-)... ( -22.70)
>DroSec_CAF1 29163 91 + 1
A-CAAAU---------U--GCAAUAUAUUUGUCUGCAAUUUGCCAACACUUGAUGGGAUUAUCAUUUAU-UUUGGUGCUGACAU----------UUCGCCAGCG---GCGAAAAACU
.-(((((---------(--((((((....))).))))))))).((.((((.(((((.....)))))...-...)))).))...(----------((((((...)---)))))).... ( -23.00)
>DroSim_CAF1 21500 90 + 1
A-CAAAU---------U--GCAAUAUAUUUGUCUGCAAUUUGCCAACACUUGAUGGGAUUAUCAUUUAU-UUUGGUGCUGACAU----------UUCGCCAGCG---GCGAA-AACU
.-(((((---------(--((((((....))).))))))))).((.((((.(((((.....)))))...-...)))).))...(----------((((((...)---)))))-)... ( -23.00)
>DroEre_CAF1 20744 91 + 1
AAAAAAU---------U--GCAAUAUAUUUGUCUGCAAUUUGCCAACACUUGAUGGGAUUAUCAUUUAU-UUGGGUGCUGACAU----------UUCGCCAACG---GCGAA-AACU
...((((---------(--((((((....))).))))))))..((.((((..(..((((....))))..-)..)))).))...(----------((((((...)---)))))-)... ( -21.80)
>DroYak_CAF1 20463 90 + 1
A-CAAAU---------U--GCAAUAUAUUUGUCUGCAAUUUGCCAACACUUGAUGGGAUUAUCAUUUAU-UUUGGUGCUGACAU----------UUCGCCAGCG---GCGAA-AACU
.-(((((---------(--((((((....))).))))))))).((.((((.(((((.....)))))...-...)))).))...(----------((((((...)---)))))-)... ( -23.00)
>DroPer_CAF1 77575 115 + 1
A-UACAUAUGUGGACAUGAACAUAAUACCCGUCGGAGGUACGACGACACUUGAUCGAAUUAUGAUUAUUUUUUGUCAAUGAAAUUUGGUAUUCUUUCGCCAGAGUAGGGCAA-AACU
.-....(((((........)))))...(((((((......))))((((..((((((.....)))))).....)))).......((((((........))))))...)))...-.... ( -24.30)
>consensus
A_CAAAU_________U__GCAAUAUAUUUGUCUGCAAUUUGCCAACACUUGAUGGGAUUAUCAUUUAU_UUUGGUGCUGACAU__________UUCGCCAGCG___GCGAA_AACU
.............................((((.((.....(((((.....(((((.....))))).....))))))).))))...........(((((........)))))..... (-12.52 = -12.88 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:02 2006