Locus 5095

Sequence ID X_DroMel_CAF1
Location 13,316,200 – 13,316,301
Length 101
Max. P 0.725453
window8288

overview

Window 8

Location 13,316,200 – 13,316,301
Length 101
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 92.67
Mean single sequence MFE -22.16
Consensus MFE -19.78
Energy contribution -19.90
Covariance contribution 0.12
Combinations/Pair 1.12
Mean z-score -1.26
Structure conservation index 0.89
SVM decision value 0.41
SVM RNA-class probability 0.725453
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13316200 101 + 22224390
UAUGUUCUCCAAGAUUUCACUUUCAUCAAAUGAUGUCAGCGACAAAGGACGAUAUUUGUCGCAAAAAGGAUAGUUUCAAAGGAGCUUAGGUACGAA-CACUU
..(((((.(((((.((((.((((((((....))))...((((((((........))))))))..))))((.....))...))))))).))...)))-))... ( -24.70)
>DroSec_CAF1 28870 101 + 1
-AUGUUCUCCAAGAUUUCACUUUCAUCAAAUGAUGUCAGCGACAAAGGACGAAAUUUGUCUCAAAAAGGAUAGUUUCAAAGGAGCUUAGGUUCGAAAAACUU
-.((..((((......((.((..((((....))))..)).))........((((((.((((......))))))))))...))))..)).............. ( -17.80)
>DroSim_CAF1 21165 101 + 1
-AUGUUCUCAAAGAUUUCACUUUCAUCAAAUGAUGUCAGCGACAAAGGACGAAAUUUGUCGCAAAAAGGAUAGUUUCAAAGGAGCUUAGGUUCGAAACACUU
-.((((((...............((((....))))...((((((((........))))))))....))))))(((((....((((....))))))))).... ( -23.80)
>DroEre_CAF1 20401 99 + 1
-AUGUUCUCCAAGAUUUCACUUUCAUCAAAUGAUGUCAGCGACAAAGGACGAUAUUUGUCGCAAAGAGGAUAGUUUCAA-AGAGCUUAGGUACGAU-CACUU
-..(((((...(((((...((((((((....))))...((((((((........))))))))..))))...)))))...-)))))...........-..... ( -21.90)
>DroYak_CAF1 20062 99 + 1
-AUGUUCUCCAAGAUUUCACUUUCAUCAAAUGAUGUCAGCGACAAAGGACGAUAUUUGUCGCAAAAAGGAUACUCGCAA-GGAGCUUAGCUUCGAU-CACUC
-.((.(((((.............((((....))))...((((((((........)))))))).....))).........-(((((...))))))).-))... ( -22.60)
>consensus
_AUGUUCUCCAAGAUUUCACUUUCAUCAAAUGAUGUCAGCGACAAAGGACGAUAUUUGUCGCAAAAAGGAUAGUUUCAAAGGAGCUUAGGUUCGAA_CACUU
...(((((...(((((...((((((((....))))...((((((((........))))))))..))))...)))))....)))))................. (-19.78 = -19.90 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:02 2006