Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,312,843 – 13,312,956 |
Length | 113 |
Max. P | 0.663770 |
Location | 13,312,843 – 13,312,956 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.81 |
Mean single sequence MFE | -28.39 |
Consensus MFE | -16.47 |
Energy contribution | -17.94 |
Covariance contribution | 1.47 |
Combinations/Pair | 1.16 |
Mean z-score | -2.67 |
Structure conservation index | 0.58 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663770 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13312843 113 + 22224390 --CUGAACUUUGGCUCU-UGCCAAUUUUCUUUUGCCCAUUGUUUGGCUAUUUCUUUGGAUCGCUGAGCAACCUUUGACCUUAUCGACUCUCUUGG----UCGGGCGCAAUUAUCACCCCA --..(((..(((((...-.)))))..)))....((((.(((((..((.(((......))).))..))))).....((((..............))----))))))............... ( -32.84) >DroSec_CAF1 25637 110 + 1 --CUGAACUUUGGCUCU-UGCCAAUUUUCUUUUGCCCAUUGUUUGGCUAUUUCUUUGGACCGCUGAGCAACCUUUGACCUUAUCGACUCUC--GG----UCGGGCGCAAUUAUCACCCC- --..(((..(((((...-.)))))..)))....((((.(((((..((....((....))..))..))))).....((((............--))----))))))..............- ( -30.80) >DroSim_CAF1 17862 111 + 1 --CUGAACUUUGGCUCU-UGCCAAUUUUCUUUUGCCCAUUGUUUGGCUAUUUCUUUGGACCGCUGAGCAACCUUUGACCUUAUCGACUCUC--GG----UCGGGCGCAAUUAUCACCCCA --..(((..(((((...-.)))))..)))....((((.(((((..((....((....))..))..))))).....((((............--))----))))))............... ( -30.80) >DroEre_CAF1 17175 111 + 1 --CUGAACUUUGGCCCU-UGCCAAUUUUCUCUGGCCCAUUGUUUGGCUAUUUUUUUGGUCCGCUGAGCAACCUUUGACCUUAUCGACUCUU--GG----UCGGGCGCAAUUAUCACCCCA --..(((..(((((...-.)))))..)))..((((((.(((((..((..............))..))))).....((((............--))----)))))).))............ ( -30.14) >DroYak_CAF1 16589 113 + 1 CUCUGAACUUUGGCUCU-UGCCAAUUUUCUUUUGGCCAUUGUUUGGCUAUUUCUUUGGUGCGCUGAGCAACCUUUGACCUUAUCGACUCUG--GC----UUGGGCGCAAUUAUCACCCCA ....(((..(((((...-.)))))..)))...((((((.....))))))........((((.(..(((.....((((.....)))).....--))----)..)))))............. ( -31.90) >DroPer_CAF1 73795 108 + 1 --CUGAACUUUUCCACUUUUCCACUUUUCCUCUUUCUAUUGU--GGAAAUUCCC------AGCCAUAUCCCGUUUGACCUUAUCGACUUUU--GUAAGCCUCGGCACAAUUAUCGCCCCA --(((....(((((((........................))--)))))....)------)).....................(((...((--((..((....))))))...)))..... ( -13.86) >consensus __CUGAACUUUGGCUCU_UGCCAAUUUUCUUUUGCCCAUUGUUUGGCUAUUUCUUUGGACCGCUGAGCAACCUUUGACCUUAUCGACUCUC__GG____UCGGGCGCAAUUAUCACCCCA ....(((..(((((.....)))))..)))....((((.(((((((((..............)))))))))...((((.....))))...............))))............... (-16.47 = -17.94 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:57 2006