| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,309,785 – 13,309,891 |
| Length | 106 |
| Max. P | 0.933959 |
| Location | 13,309,785 – 13,309,891 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.30 |
| Mean single sequence MFE | -25.68 |
| Consensus MFE | -20.16 |
| Energy contribution | -20.04 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.933959 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13309785 106 + 22224390 ---------AUUUUCUGGCAUAAAUGUUUGCUUAACAUAGAGCAAAUAUAAUUGGUCUUGACUUAAGUAUCCGCCCGGGGGAAUUAC-UAACCA----AUUCAUCAAUUUUGCUAGCUUC ---------.....((((((...((((((((((......))))))))))(((((((.........((((....((....))...)))-).))))----))).........)))))).... ( -24.70) >DroSec_CAF1 22578 107 + 1 U--------UUUUUCUGGCAUAAAUGUUUGCUUAACAUAGAGCAAAUAUAAUUGGUCUUGACUUAAGUAUCCGCCCGGGGGAAUUAC-UAACCA----AUUCAUCAAUUUUGCUAGCUUC .--------.....((((((...((((((((((......))))))))))(((((((.........((((....((....))...)))-).))))----))).........)))))).... ( -24.70) >DroSim_CAF1 14778 102 + 1 U--------AUUUUCUGGCAUAAAUGUUUGCUUAACAUAGAGCAAAUAUAAUUGGUCUUGACUUAAGUAUCCGCCCGGGGGAAUUAC-UAACCA----AUUCAUCAAUUUUGCUA----- .--------......(((((...((((((((((......))))))))))(((((((.........((((....((....))...)))-).))))----))).........)))))----- ( -21.70) >DroEre_CAF1 14352 111 + 1 A--------AUUUGCUGGCAUAAAUGUUUGCUUAACAUAGGGCAAAUAUAAUUGGUCUUGACUUAAGUAUCCGCCCGGGGC-UUUACAUCAUCAAUUCAUUCAUCAAUUUUGCUAGCUUC .--------....(((((((...((((((((((......))))))))))(((((((..((....((((.(((....)))))-))..))..))))))).............)))))))... ( -28.50) >DroYak_CAF1 13516 115 + 1 AAUACUGAAAUUUGCUGGCAUAAAUGUUUGCUUAACAGAGAGCAAAUAUAAUUGGUCUUGACUUAAGUAUCCGCCCGGGGGAUUUAC-UAACCA----AUUCAUCAAUUUUGCUAGCUUC .............(((((((...((((((((((......))))))))))(((((((.........((((....((....))...)))-).))))----))).........)))))))... ( -28.80) >consensus A________AUUUUCUGGCAUAAAUGUUUGCUUAACAUAGAGCAAAUAUAAUUGGUCUUGACUUAAGUAUCCGCCCGGGGGAAUUAC_UAACCA____AUUCAUCAAUUUUGCUAGCUUC ..............((((((...((((((((((......))))))))))(((((((..............((....))((...........)).........))))))).)))))).... (-20.16 = -20.04 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:56 2006