Locus 5090

Sequence ID X_DroMel_CAF1
Location 13,309,576 – 13,309,671
Length 95
Max. P 0.970032
window8280 window8281

overview

Window 0

Location 13,309,576 – 13,309,671
Length 95
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 91.56
Mean single sequence MFE -9.64
Consensus MFE -8.61
Energy contribution -8.61
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.68
Structure conservation index 0.89
SVM decision value 1.65
SVM RNA-class probability 0.970032
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13309576 95 + 22224390
UAC-UUUUCAUAUACUUAAUAUCAUUAUGUACACAUGCACCCCCAGCACAUAACAUGAAUAUAUACGAACUCUUUAUGCCAAGCAUAAUAAGCAAA
...-..............((((..((((((.....(((.......)))....))))))..)))).....((..((((((...))))))..)).... ( -10.30)
>DroSec_CAF1 22369 96 + 1
UACAUUUUCAUAUACUUAAUAUCAUUAUGUACACAUGCACCCCCCGCCCAUAACAUGAAUAUAUACGAACUCUUUAUGCCAAGCAUAAUAAGCAAA
..................((((..((((((......((.......)).....))))))..)))).....((..((((((...))))))..)).... (  -8.70)
>DroSim_CAF1 14569 96 + 1
UACAUUUUCAUAUACUUAAUAUCAUUAUGUACACAUGCACCCCCAGCACAUAACAUGAAUAUAUACGAACUCUUUAUGCCAAGCAUAAUAAGCAAA
..................((((..((((((.....(((.......)))....))))))..)))).....((..((((((...))))))..)).... ( -10.30)
>DroEre_CAF1 14138 96 + 1
UACAUUCCCAUAUACUUAAUAUCAUUAUGUACACAUGCACUCCCAGCACAUAACAUGAAUAUAUACGAACUCUUUAUGCCAAGCAUAAUAAGCAAA
..................((((..((((((.....(((.......)))....))))))..)))).....((..((((((...))))))..)).... ( -10.30)
>DroYak_CAF1 13321 82 + 1
CACAUUUUCAUAUACUUAAUAUCAUUAUGUACACAUGCA--------------CAUGAAUAUAUACGAACUCUUUAUGCCAAGCAUAAUAAGCAAA
..................((((..((((((.(....).)--------------)))))..)))).....((..((((((...))))))..)).... (  -8.60)
>consensus
UACAUUUUCAUAUACUUAAUAUCAUUAUGUACACAUGCACCCCCAGCACAUAACAUGAAUAUAUACGAACUCUUUAUGCCAAGCAUAAUAAGCAAA
.........................((((((..((((................))))..))))))....((..((((((...))))))..)).... ( -8.61 =  -8.61 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 13,309,576 – 13,309,671
Length 95
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 91.56
Mean single sequence MFE -19.69
Consensus MFE -16.14
Energy contribution -16.48
Covariance contribution 0.34
Combinations/Pair 1.04
Mean z-score -1.46
Structure conservation index 0.82
SVM decision value 0.36
SVM RNA-class probability 0.703436
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13309576 95 - 22224390
UUUGCUUAUUAUGCUUGGCAUAAAGAGUUCGUAUAUAUUCAUGUUAUGUGCUGGGGGUGCAUGUGUACAUAAUGAUAUUAAGUAUAUGAAAA-GUA
...((((.((((((...)))))).))))((((((((......(((((((((.............)))))))))........))))))))...-... ( -20.36)
>DroSec_CAF1 22369 96 - 1
UUUGCUUAUUAUGCUUGGCAUAAAGAGUUCGUAUAUAUUCAUGUUAUGGGCGGGGGGUGCAUGUGUACAUAAUGAUAUUAAGUAUAUGAAAAUGUA
...((((.((((((...)))))).))))..((((((((.(((.((........)).))).))))))))..............(((((....))))) ( -18.60)
>DroSim_CAF1 14569 96 - 1
UUUGCUUAUUAUGCUUGGCAUAAAGAGUUCGUAUAUAUUCAUGUUAUGUGCUGGGGGUGCAUGUGUACAUAAUGAUAUUAAGUAUAUGAAAAUGUA
...((((.((((((...)))))).))))((((((((......(((((((((.............)))))))))........))))))))....... ( -20.36)
>DroEre_CAF1 14138 96 - 1
UUUGCUUAUUAUGCUUGGCAUAAAGAGUUCGUAUAUAUUCAUGUUAUGUGCUGGGAGUGCAUGUGUACAUAAUGAUAUUAAGUAUAUGGGAAUGUA
...((((.((((((...)))))).))))((.((((((((...(((((((((.............))))))))).......)))))))).))..... ( -20.62)
>DroYak_CAF1 13321 82 - 1
UUUGCUUAUUAUGCUUGGCAUAAAGAGUUCGUAUAUAUUCAUG--------------UGCAUGUGUACAUAAUGAUAUUAAGUAUAUGAAAAUGUG
...((((.((((((...)))))).))))...(((((.((((((--------------(((..((((........))))...))))))))).))))) ( -18.50)
>consensus
UUUGCUUAUUAUGCUUGGCAUAAAGAGUUCGUAUAUAUUCAUGUUAUGUGCUGGGGGUGCAUGUGUACAUAAUGAUAUUAAGUAUAUGAAAAUGUA
...((((.((((((...)))))).))))..((((((((.(((.((........)).))).))))))))..............(((((....))))) (-16.14 = -16.48 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:55 2006