Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,470,996 – 1,471,091 |
Length | 95 |
Max. P | 0.988094 |
Location | 1,470,996 – 1,471,091 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 97.94 |
Mean single sequence MFE | -36.30 |
Consensus MFE | -33.82 |
Energy contribution | -33.93 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.79 |
Structure conservation index | 0.93 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662695 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1470996 95 + 22224390 GCGUGUGCGUGCUAGCCAUCUGU--GUGCGACUGGCCGACAUUCAAGGUUGUCGGCGCAUAACUUGUUGUUGCCGCACUGCAAUUGUUGCUGCCACA ..(((.(((.((.(((.((.(((--(((((....(((((((........)))))))((((((....))).)))))))).))))).))))))))))). ( -34.90) >DroSec_CAF1 6447 97 + 1 GCGUGUGCGUGCUAGCCAUCUGUGUGUGCGACUGGCCGACAUUCAAGGUUGUCGGCGCAUAACUUGUUGUUGUCGCACUGCAAUUGUUGCUGCCACA ..(((.(((.((.(((.((.((((.(((((((..(((((((........)))))))(((.....)))....))))))))))))).))))))))))). ( -37.70) >DroEre_CAF1 7466 97 + 1 GCGUGUGCGUGCUAGCCAUCUGUGUGUGCGACUGGCCGACAUUCAAGGUUGUCGGCGCAUAACUUGUUGUUGCCGCACUGCAAUUGUUGCUGCCACA ..(((.(((.((.(((.((..(((((.(((((..(((((((........)))))))(((.....))).))))))))))....)).))))))))))). ( -36.30) >consensus GCGUGUGCGUGCUAGCCAUCUGUGUGUGCGACUGGCCGACAUUCAAGGUUGUCGGCGCAUAACUUGUUGUUGCCGCACUGCAAUUGUUGCUGCCACA ..(((.(((.((.(((.((.((((.(((((....(((((((........)))))))((((((....))).)))))))))))))).))))))))))). (-33.82 = -33.93 + 0.11)
Location | 1,470,996 – 1,471,091 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 97.94 |
Mean single sequence MFE | -34.83 |
Consensus MFE | -34.72 |
Energy contribution | -34.50 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.81 |
Structure conservation index | 1.00 |
SVM decision value | 2.11 |
SVM RNA-class probability | 0.988094 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1470996 95 - 22224390 UGUGGCAGCAACAAUUGCAGUGCGGCAACAACAAGUUAUGCGCCGACAACCUUGAAUGUCGGCCAGUCGCAC--ACAGAUGGCUAGCACGCACACGC (((((((((....(((...((((((((((.....))).((.(((((((........))))))))))))))))--...))).))).)).))))..... ( -35.30) >DroSec_CAF1 6447 97 - 1 UGUGGCAGCAACAAUUGCAGUGCGACAACAACAAGUUAUGCGCCGACAACCUUGAAUGUCGGCCAGUCGCACACACAGAUGGCUAGCACGCACACGC (((((((((..((.(((..((((((((((.....))).((.(((((((........))))))))))))))))...))).))))).)).))))..... ( -34.90) >DroEre_CAF1 7466 97 - 1 UGUGGCAGCAACAAUUGCAGUGCGGCAACAACAAGUUAUGCGCCGACAACCUUGAAUGUCGGCCAGUCGCACACACAGAUGGCUAGCACGCACACGC (((((((((..((.(((..((((((((((.....))).((.(((((((........))))))))))))))))...))).))))).)).))))..... ( -34.30) >consensus UGUGGCAGCAACAAUUGCAGUGCGGCAACAACAAGUUAUGCGCCGACAACCUUGAAUGUCGGCCAGUCGCACACACAGAUGGCUAGCACGCACACGC (((((((((..((.(((..((((((((((.....))).((.(((((((........))))))))))))))))...))).))))).)).))))..... (-34.72 = -34.50 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:21 2006