Locus 5084

Sequence ID X_DroMel_CAF1
Location 13,284,053 – 13,284,165
Length 112
Max. P 0.586402
window8268

overview

Window 8

Location 13,284,053 – 13,284,165
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.02
Mean single sequence MFE -26.72
Consensus MFE -19.54
Energy contribution -19.26
Covariance contribution -0.28
Combinations/Pair 1.04
Mean z-score -1.70
Structure conservation index 0.73
SVM decision value 0.11
SVM RNA-class probability 0.586402
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13284053 112 + 22224390
GCUAAAUA--UAUGCGCUCUAUGAUUUCAUAUCAUGUUCGGUAUUAAAAUGCACUUGUUUUU----CCGUACGCAAAAUGGCUAUUAUUUGCC--UGCUUUGUGUGCGCAAAAAUUCGAC
((......--.((((....((((((.....))))))....))))......)).(..((((((----.((((((((((..(((........)))--...)))))))))).))))))..).. ( -28.02)
>DroSec_CAF1 30213 112 + 1
GCUAAAUA--UAUGCGCUCUAUGAUUUCAUAUCAUGUUCGGUAUUAAAAUGCACUUGUGUUU----CCGUACGCAAAAUGGCUAUUAUUUGCC--AGCUUUGUGUGCGCAAAAUUCGAAA
((......--.((((....((((((.....))))))....))))......))..(((..(((----.((((((((((.((((........)))--)..)))))))))).)))...))).. ( -28.62)
>DroSim_CAF1 31207 112 + 1
GCUAAAUA--UAUGCGCUCUAUGAUUUCAUAUCAUGUUCGGUAUUAAAAUGCACUUGUGUUU----CCGUACGCAAAAUGGCUAUUAUUUGCC--AGCUUUGUGUGCGCAAAAUUCGAAA
((......--.((((....((((((.....))))))....))))......))..(((..(((----.((((((((((.((((........)))--)..)))))))))).)))...))).. ( -28.62)
>DroEre_CAF1 30071 112 + 1
GCUAAAUA--UAUUCGCUCUAUGAUUUCAUAUCAUGUUCGGUAUU-AAAUGCACUCGUUUUU----CACUACGCAAAGUGGCCAUUAUUUGCCUAUGCUUUGUGUGCGGAAAAUUCG-AC
((.....(--(((.((..(.(((((.....))))))..)))))).-....))..(((.((((----(..(((((((((((((........)))...))))))))))..)))))..))-). ( -27.20)
>DroYak_CAF1 29886 118 + 1
GCUAAAUAUAUAUUCGCUCUAUGAUUUCAUAUCAUGUUCGGUAUUGAAAUGCACUUGUUUUUUUUGCACUACGCAAAAUGGCCAUUAUUUGC-AGCGCUUUGUGUGCGGAAAAUUCG-AC
((.......((((.((..(.(((((.....))))))..))))))......))..(((..((((((((((...(((((...((........))-.....)))))))))))))))..))-). ( -21.12)
>consensus
GCUAAAUA__UAUGCGCUCUAUGAUUUCAUAUCAUGUUCGGUAUUAAAAUGCACUUGUUUUU____CCGUACGCAAAAUGGCUAUUAUUUGCC__AGCUUUGUGUGCGCAAAAUUCG_AC
............(((((..((((((.....))))))....((((....))))..................(((((((..(((........))).....)))))))))))).......... (-19.54 = -19.26 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:43 2006