Locus 5083

Sequence ID X_DroMel_CAF1
Location 13,283,539 – 13,283,631
Length 92
Max. P 0.895754
window8267

overview

Window 7

Location 13,283,539 – 13,283,631
Length 92
Sequences 4
Columns 92
Reading direction reverse
Mean pairwise identity 94.16
Mean single sequence MFE -18.67
Consensus MFE -18.04
Energy contribution -17.85
Covariance contribution -0.19
Combinations/Pair 1.05
Mean z-score -1.72
Structure conservation index 0.97
SVM decision value 0.99
SVM RNA-class probability 0.895754
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13283539 92 - 22224390
UUCCUGAAACAUUCACUUUUCACUUAAGAUCUGAAGGCACAACCGCAAUCAGGUCAUAUAGCCGACAGCUCCCAUGACAAUGUGCAGAUACA
...(((..(((((.................((((..((......))..))))(((((..(((.....)))...)))))))))).)))..... ( -17.90)
>DroSec_CAF1 29709 85 - 1
UUCCUGAAACAUU-------CACUUAAGAUCUGAAGGCACAACCGCAAUCAGGUCAUAUAGCCGACAGCUCCCAUGACAAUGUGCAGAUACA
...(((..(((((-------..........((((..((......))..))))(((((..(((.....)))...)))))))))).)))..... ( -17.90)
>DroEre_CAF1 29683 84 - 1
UUCCUGAAACAUU-------CACUUAAGAUCUGAAGGCAUAACCGCAAUCAGGUCAUA-AGCCGACAGCUCCCAUGGCAAUGUGCAGAUACA
...(((..(((((-------..((((.(((((((..((......))..))))))).))-))......(((.....)))))))).)))..... ( -21.00)
>DroYak_CAF1 29433 85 - 1
UUCCUGAAACAUU-------CACUUAAGAUCUGAAGGCAUAACCGCAAUCAGGUCAUAUAGCCGACAGCUCCCAUGACAAUGUGCAGAUACA
...(((..(((((-------..........((((..((......))..))))(((((..(((.....)))...)))))))))).)))..... ( -17.90)
>consensus
UUCCUGAAACAUU_______CACUUAAGAUCUGAAGGCACAACCGCAAUCAGGUCAUAUAGCCGACAGCUCCCAUGACAAUGUGCAGAUACA
...(((..(((((.................((((..((......))..))))(((((..(((.....)))...)))))))))).)))..... (-18.04 = -17.85 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:42 2006