Locus 5080

Sequence ID X_DroMel_CAF1
Location 13,282,467 – 13,282,571
Length 104
Max. P 0.909043
window8257

overview

Window 7

Location 13,282,467 – 13,282,571
Length 104
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.00
Mean single sequence MFE -28.38
Consensus MFE -22.40
Energy contribution -23.04
Covariance contribution 0.64
Combinations/Pair 1.04
Mean z-score -2.01
Structure conservation index 0.79
SVM decision value 1.06
SVM RNA-class probability 0.909043
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13282467 104 - 22224390
-------UGGUCAAAGGAGGCGGAAAGCAGUUAAGCUAACCGA---------AAUCGCCAAAGGAAGUUUGGGCUUAACUGUAAAAACUUUUGGCUUAAUUUUAUUGAAAUAAAUGGUUA
-------.(((.(((..((((.((((((((((((((...((((---------(....((...))...))))))))))))))......))))).))))..))).))).............. ( -24.90)
>DroSec_CAF1 28659 113 - 1
-------UGGUCAAAGGAGGCGGAAGGCAGUUAAGCUAACCGAAAGCGGCAAAAUCGCCAAAGGAAGUUUGGGCUUAACAACAAAAACUUUUGGCUUAAUUUUAUUGAAAUAAAUGGUUU
-------.(((((((((.(.(....).).((((((((...(....).(((......)))............))))))))........)))))))))........................ ( -29.00)
>DroSim_CAF1 29363 113 - 1
-------UGGUCAAAGGAUGCGGAAGGCAGUUAAGCUAACCGAAAGCGGCAAAAUCGCCAAAGGAAGUUUGGGCUUAACAACAAAAACUUUUGGCUUAAUUUUAUUGAAAUAAAUGGUUU
-------.(((((((((.(((.....)))((((((((...(....).(((......)))............))))))))........)))))))))........................ ( -27.50)
>DroEre_CAF1 28645 113 - 1
-------UGGUCAAAGGAGGCGGAAUGCCGUUAAGCUAACCAAAAGCGGGAAAAUCGCAAAAGGAAGUUUGGGCUUAACAACGAAAACUUUUGGCUUCAUUUUAUUGAAAUAAAUGGUUC
-------.(((((((((.(((.....)))(((((((...(((((.((((.....)))).........))))))))))))........)))))))))((((((.........))))))... ( -29.10)
>DroYak_CAF1 28333 120 - 1
GGUCGGUGGGUCAAAGGAGGCGGAAGGCAGUUAAGCUAACCGAAAGCGGGAAAAUCGCAAAAGGAAGUUUGGGCUUAGCAACAUAAACUUUUGGCUUCAUUUUAUUGAAAUAAAUGGGUC
(..(.((.(((((((((.(.(....).).((((((((..((....((((.....))))....)).......))))))))........)))))))))(((......))).....)).)..) ( -31.40)
>consensus
_______UGGUCAAAGGAGGCGGAAGGCAGUUAAGCUAACCGAAAGCGGCAAAAUCGCCAAAGGAAGUUUGGGCUUAACAACAAAAACUUUUGGCUUAAUUUUAUUGAAAUAAAUGGUUC
........(((((((((..((.....)).((((((((..((....((((.....))))....)).......))))))))........)))))))))........................ (-22.40 = -23.04 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:34 2006