Locus 5075

Sequence ID X_DroMel_CAF1
Location 13,271,313 – 13,271,418
Length 105
Max. P 0.903572
window8244

overview

Window 4

Location 13,271,313 – 13,271,418
Length 105
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 85.59
Mean single sequence MFE -23.28
Consensus MFE -17.59
Energy contribution -17.40
Covariance contribution -0.19
Combinations/Pair 1.06
Mean z-score -2.14
Structure conservation index 0.76
SVM decision value 1.03
SVM RNA-class probability 0.903572
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13271313 105 - 22224390
CAAUUGGCCAAUUAUGGCGGAAUGGGAAUGUGGCCAGGGCCGAAACCAGAAAUUCAAACCACACAAAAUAACCCACCACCCAA----CUUCCCA-CUUACCA-------AACUGAAA
......((((....))))((((((((((.(((((....)))(((........)))...........................)----)))))))-.)).)).-------........ ( -21.40)
>DroSec_CAF1 15784 105 - 1
CAAUUGGCCAAUUAUGGCGGAAUGGGAAUGUGGCCAAGGCCGAAACCAGAAAUUCAAACCACACAAAAUACCCCACCACCCAA----CUUUCCA-CUUCCCA-------AACCGAAA
......((((....))))((..((((((.(((((....)))(((........)))............................----......)-)))))))-------..)).... ( -22.50)
>DroSim_CAF1 16257 105 - 1
CAAUUGGCCAAUUAUGGCGGAAUGGGAAUGUGGCCAAGGCCGAAACCAGAAAUUCAAACCACACAAAAUAACCCACCACCCAA----CUUUCCA-CUUCCCA-------AACCGAAA
......((((....))))((..((((((.(((((....)))(((........)))............................----......)-)))))))-------..)).... ( -22.50)
>DroYak_CAF1 16242 113 - 1
CAAUUGGCCAAUUAUGGCGGAAUGGGAAUGCGGCCAGGGUCGAAACCAGAAAUUCAAACCACGCAAAAUGCCCCACACUC---UCCGCAGCCCAAC-UCGCAAUCUGAAAACCGAAA
...((((.........((((..((((..(((((..(((((.(((........))).......((.....)).....))))---)))))).))))..-))))..........)))).. ( -26.71)
>consensus
CAAUUGGCCAAUUAUGGCGGAAUGGGAAUGUGGCCAAGGCCGAAACCAGAAAUUCAAACCACACAAAAUAACCCACCACCCAA____CUUCCCA_CUUCCCA_______AACCGAAA
...((.((((....)))).)).((((.....(((....)))(((........)))................)))).......................................... (-17.59 = -17.40 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:23 2006