| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,270,964 – 13,271,079 |
| Length | 115 |
| Max. P | 0.844691 |
| Location | 13,270,964 – 13,271,079 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.94 |
| Mean single sequence MFE | -31.40 |
| Consensus MFE | -14.52 |
| Energy contribution | -15.12 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.844691 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13270964 115 - 22224390 AUGAAUAUUUCAGGCGAAGCAGAACAGCAGAGGCCAAAAACACCUGCUAAACGCACGCACACGUGUGCAGUAAUGUGUGCACUGAGAGAAAGAAGGCUGU----UAUUGAGUUUUUUUU- .......(((((((((..(((..(((((((..(.......)..)))))....((((((....)))))).))..))).))).)))))).((((((((((..----.....))))))))))- ( -33.70) >DroSec_CAF1 15409 115 - 1 AUGAAUAUUUCAGACGAAGG-CAACAGCAGAGGCCAAAAACACCUGCUAAACGCACGCACACGUGUGCAGUAAUGUGUGCACUGAGAGAAAGAUGGCUGU----AAUUGGGUUUUUUUCA .......((((((.((..(.-...)(((((..(.......)..)))))...))...((((((((........)))))))).))))))((((((.(.((..----....)).).)))))). ( -31.30) >DroSim_CAF1 15881 115 - 1 AUGAAUAUUUCAGACGAAGG-CAACAGCAGAGGCCAAAAACACCUGCUAAACGCACGCACACGUGUGCAGUAAUGUGUGCACUGAGAGAAAGAAGGCUGU----AAUUGGGUUUUUUUCA .......((((((.((..(.-...)(((((..(.......)..)))))...))...((((((((........)))))))).))))))((((((((.((..----....)).)))))))). ( -34.50) >DroEre_CAF1 17285 103 - 1 AUGAGUAA----------------CAGCAGAGGCCAAAAACACCUGCUAAACGCACGUACACGUGUGCAGUAAUGUGUGCACUGAGAGAAACAGUGCAGUGUCUACUGGACUAUCCUGC- ...(((..----------------(((.(((.((.....((((.((((...((((((....)))))).))))..))))((((((.......)))))).)).))).))).))).......- ( -31.20) >DroYak_CAF1 15888 96 - 1 AUGAAUAU-------------------UUCAGUCCAGAAACACCUGCUAAACGCACGUACACGUGUGCAGUAAUUUGUGCACUGAGCGAAA--GUGCUGUG--CAAUUGAUUGACUUAC- ........-------------------.((((((.........((((.....(((((....))))))))).......(((((...((....--))...)))--))...)))))).....- ( -26.30) >consensus AUGAAUAUUUCAG_CGAAG___AACAGCAGAGGCCAAAAACACCUGCUAAACGCACGCACACGUGUGCAGUAAUGUGUGCACUGAGAGAAAGAAGGCUGU____AAUUGAGUUUUUUUC_ ........................((((................(((.....))).((((((((........))))))))...............))))..................... (-14.52 = -15.12 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:22 2006