Locus 5073

Sequence ID X_DroMel_CAF1
Location 13,265,700 – 13,265,809
Length 109
Max. P 0.969425
window8242

overview

Window 2

Location 13,265,700 – 13,265,809
Length 109
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 92.38
Mean single sequence MFE -23.10
Consensus MFE -20.40
Energy contribution -20.28
Covariance contribution -0.12
Combinations/Pair 1.07
Mean z-score -1.69
Structure conservation index 0.88
SVM decision value 1.64
SVM RNA-class probability 0.969425
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13265700 109 - 22224390
ACCGACUUGAAAAAGUAAUUAAGUCAUUUGUCUGCAACCCCAGACGAUUUCCCAUCUCU-------UUUCA-CCCGCUUUUCACUUGAGUUAAUUGUGGUCCCAAAAUAGGAAAAUU
...(((((((........)))))))..(((((((......)))))))(((((.......-------.....-.((((..((.((....)).))..))))..........)))))... ( -21.50)
>DroSec_CAF1 10141 108 - 1
ACCGACUUGAAAAAGUAAUUAAGUCAUUUGUCUGCAACCCCAGACGAUUUCCCAUC-CU-------CUUCU-ACCGCUUUUCACUUGAGCUAAUUGUGGUCCCAAAAUAGGAAAAUU
...(((((((........)))))))..(((((((......)))))))(((((....-..-------...((-((.((((.......)))).....))))..........)))))... ( -21.81)
>DroSim_CAF1 10521 108 - 1
ACCGACUUGAAAAAGUAAUUAAGUCAUUUGUCUGCAACCCCAGACGAUUUCCCAUC-CU-------CUUCU-ACCGCUUUUCACUUGAGCUAAUUGUGGUCCCAAAAUAGGAAAAUU
...(((((((........)))))))..(((((((......)))))))(((((....-..-------...((-((.((((.......)))).....))))..........)))))... ( -21.81)
>DroEre_CAF1 12072 112 - 1
ACCGACUUGAAAAAGUAAUUAAGUCAUUUGUCUGCAACCCCAGACGAUUUCCCAUC-CUGCGC----UUUUCUCCGCUUUUCACUUGGGCUAAUUGUGGUCCCAAAAUAGGAAAAUU
...(((((((........)))))))..(((((((......)))))))(((((....-..(((.----.......))).......((((((((....))).)))))....)))))... ( -27.70)
>DroYak_CAF1 10437 115 - 1
ACCGACUUGAAAAAGUAAUUAAGUCAUUUGUCUGCAACCCCAGACGAUUGCCCAUC-CCUCGCCCGCUUUU-CCCGCUUUUCACUUGAGCUAAUUGUGGUCCCAAAAUAGGAAAAUU
.(((((((((........)))))))..(((((((......))))))).........-......((((..((-...((((.......)))).))..))))..........))...... ( -22.70)
>consensus
ACCGACUUGAAAAAGUAAUUAAGUCAUUUGUCUGCAACCCCAGACGAUUUCCCAUC_CU_______CUUCU_ACCGCUUUUCACUUGAGCUAAUUGUGGUCCCAAAAUAGGAAAAUU
...(((((((........)))))))..(((((((......)))))))(((((.......................((((.......))))..(((.((....)).))).)))))... (-20.40 = -20.28 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:21 2006