Locus 5071

Sequence ID X_DroMel_CAF1
Location 13,263,032 – 13,263,150
Length 118
Max. P 0.848744
window8240

overview

Window 0

Location 13,263,032 – 13,263,150
Length 118
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 97.18
Mean single sequence MFE -36.67
Consensus MFE -34.97
Energy contribution -34.87
Covariance contribution -0.11
Combinations/Pair 1.06
Mean z-score -2.00
Structure conservation index 0.95
SVM decision value 0.78
SVM RNA-class probability 0.848744
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13263032 118 - 22224390
GAUGCUGAUGAGGGUUGGACUAACUCAAUCUCAGUUUAAAUUUAAGCGCCGGCAAUUAUUAGCGCUGUCAAGCGGAGCAUUUUGGCCCUUUUCAUGCAUCUUUCAUACGCUUAGCGUG
((((((((.((((((..((....(((.......(((((....)))))...............((((....)))))))...))..)))))).))).))))).....(((((...))))) ( -36.40)
>DroSim_CAF1 9000 118 - 1
GAUGCUGAUGAGGGUUGGACUAACUCAAUCUCAGUUUAAAUUUAAGCGCCGGCAAUUAUUAGCGCUGUCAAGCGGAGCAUUUUGGCCCUUUUCAUGCAUCUUUCAUACGCUUAGCGUG
((((((((.((((((..((....(((.......(((((....)))))...............((((....)))))))...))..)))))).))).))))).....(((((...))))) ( -36.40)
>DroEre_CAF1 10698 116 - 1
-AUGCUGAUGAGGGUUGGACUAACUCAAUCUCAGUUUGAAUUUAAGCGCCGGCAAUUAUUAGCGCUGUCAAGCGGAGCA-UUUGGCCCUUUUCAUGCAUCUUUAAUGCGCUUAGCGUG
-(((((((.((((((..((....(((.......((((((.....(((((..(......)..))))).)))))).)))..-))..)))))).))).)))).....((((.....)))). ( -37.20)
>consensus
GAUGCUGAUGAGGGUUGGACUAACUCAAUCUCAGUUUAAAUUUAAGCGCCGGCAAUUAUUAGCGCUGUCAAGCGGAGCAUUUUGGCCCUUUUCAUGCAUCUUUCAUACGCUUAGCGUG
((((((((.((((((..((....(((.......(((((....)))))...............((((....)))))))...))..)))))).))).)))))......((((...)))). (-34.97 = -34.87 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:19 2006