Locus 5069

Sequence ID X_DroMel_CAF1
Location 13,260,688 – 13,260,803
Length 115
Max. P 0.984341
window8238

overview

Window 8

Location 13,260,688 – 13,260,803
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 94.42
Mean single sequence MFE -37.77
Consensus MFE -33.04
Energy contribution -33.68
Covariance contribution 0.64
Combinations/Pair 1.09
Mean z-score -1.86
Structure conservation index 0.87
SVM decision value 1.97
SVM RNA-class probability 0.984341
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13260688 115 - 22224390
UGCCACAUUCCACUUGCCACUGGCCAGUAAGUCCGCUGUCAGCGCGGCAAGAUAAUCAGCUCCGAACUCGACGUGGACUUUCCUCAUUUUAUCUCUGGCCGGUCGGUCGGUGACU
..........((((.((((((((((((.((((((((.(((((..(((..((........)))))..)).)))))))))))..............))))))))).))).))))... ( -43.56)
>DroSec_CAF1 6324 115 - 1
UGCCACAUUCCACUUGCCACUGGCCAGUAAGUCCGCUGUCAGCGCGGCAAGAUAAUCAGCUCCGAACUCGACGUGGACUUUCCUCAUUUUAUCUCUGGCCGGUCGGUCGGUGACU
..........((((.((((((((((((.((((((((.(((((..(((..((........)))))..)).)))))))))))..............))))))))).))).))))... ( -43.56)
>DroSim_CAF1 6693 115 - 1
UGCCACAUUCCACUUGCCACUGGCCAGUAAGUCCGCUGUCAGCGCGGCAAGAUAAUCAGCUCCGAACUCGACGUGGACUUUCCUCAUUUUAUCUCUGGCCGGCCGGUCGGUGACU
..........((((.(((.((((((((.((((((((.(((((..(((..((........)))))..)).)))))))))))..............))))))))..))).))))... ( -41.36)
>DroEre_CAF1 8344 111 - 1
UGCCACUUGCCACUUGCCACUGGCCACUAAGUCCGCUGUCAGCGCGGCAAGAUAAUCAGCUCCGAACUCGACGUGGACUUUCCUCAUUUUAUCUCUGGUU----GGUCGGUGACU
.................(((((((((..((((((((.(((((..(((..((........)))))..)).))))))))))).((.............)).)----))))))))... ( -31.92)
>DroYak_CAF1 6821 111 - 1
UGCCACUUUCCACUUGCCACUGGCCACUAAGUCCGCUGUCAGCGCGGCAAGAUAAUCAGCUCCGAACUCGACGUGGACUUUCCUCAUUUUAUCUCCGGCU----GCCCGGUGACU
.((((...............))))....((((((((.(((((..(((..((........)))))..)).)))))))))))...........((.((((..----..)))).)).. ( -28.46)
>consensus
UGCCACAUUCCACUUGCCACUGGCCAGUAAGUCCGCUGUCAGCGCGGCAAGAUAAUCAGCUCCGAACUCGACGUGGACUUUCCUCAUUUUAUCUCUGGCCGG_CGGUCGGUGACU
..........((((.(((..(((((((.((((((((.(((((..(((..((........)))))..)).)))))))))))..............)))))))...))).))))... (-33.04 = -33.68 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:17 2006