Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,256,187 – 13,256,302 |
Length | 115 |
Max. P | 0.696084 |
Location | 13,256,187 – 13,256,302 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 91.45 |
Mean single sequence MFE | -46.33 |
Consensus MFE | -39.25 |
Energy contribution | -39.37 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.11 |
Structure conservation index | 0.85 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.696084 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13256187 115 - 22224390 ----GCAAGAGGGCAAGGGGGCAGGGGAGCCAGCGGGGGCGAGGGCGGUGUAGAUGGGUCAAGAGGUCAGGCUGCUGGCAAUUACAUUUGACUUGUUGUUCCUGCUGCCCAUUGCACUC ----....(((.((((..(((((((((((((.((....))...)))......((..(((((((..(((((....))))).......)))))))..))..)))).)))))).)))).))) ( -46.70) >DroSec_CAF1 1892 113 - 1 AGAGGCAAGGGGGCAAGGUGGCAAGGGAGCCAGCGGGG------GCGGUGUUGAUGGGUCAAGAGGUCAGGCUGCUGGCAAUUACAUUUGACUUGUUGUUCCUGCUGCCCAUUGCACUC .(((((((..(((((...((((......))))((((((------((......((..(((((((..(((((....))))).......)))))))..))))))))))))))).)))).))) ( -47.50) >DroSim_CAF1 1914 113 - 1 AGAGGCAAGGGGGCAAGGUGGCAAGGGAGUCAGCGGGG------GCGGUGUUGAUGGGUCAAGAGGUCAGGCUGCUGGCAAUUACAUUUGACUUGUUGUUCCUGCUGCCCAUUGCACUC .(((((((..(((((...((((......))))((((((------((......((..(((((((..(((((....))))).......)))))))..))))))))))))))).)))).))) ( -44.80) >consensus AGAGGCAAGGGGGCAAGGUGGCAAGGGAGCCAGCGGGG______GCGGUGUUGAUGGGUCAAGAGGUCAGGCUGCUGGCAAUUACAUUUGACUUGUUGUUCCUGCUGCCCAUUGCACUC ....((((..(((((.(.((((......)))).)..........((((.(..((..(((((((..(((((....))))).......)))))))..))...)))))))))).)))).... (-39.25 = -39.37 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:11 2006