Locus 5063

Sequence ID X_DroMel_CAF1
Location 13,255,230 – 13,255,348
Length 118
Max. P 0.581470
window8230

overview

Window 0

Location 13,255,230 – 13,255,348
Length 118
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 80.93
Mean single sequence MFE -27.75
Consensus MFE -18.83
Energy contribution -19.45
Covariance contribution 0.62
Combinations/Pair 1.12
Mean z-score -1.63
Structure conservation index 0.68
SVM decision value 0.10
SVM RNA-class probability 0.581470
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13255230 118 + 22224390
UAUUGUGCAGUUAACUGCUUGCCUGUUACUAACAUGCAGUAAAGGCGCAAGUCCAAACUGCUUGGCCACUUGGCGCGCAUUUUGAUUAUUCAUUCAAACAUUUAUUGUAUUCAUUUUG
....(((((((....(((.((((.((..((((...(((((...(((....)))...)))))))))..))..)))).))).(((((........))))).....)))))))........ ( -28.80)
>DroSec_CAF1 952 118 + 1
UAUUGUGCAGUUAACUACUUGCCUGUUACCAACAUGCAGCAAAGGCGCAAGUCCAAACUGCUUGGCCACUUGGCGCGCAUUUUGAUUAUUCAUUCAAACAUUUAUUGUAUUCAUUUUG
...((((((((.....))).(((.((..((((...((((....(((....)))....))))))))..))..)))))))).(((((........))))).................... ( -27.50)
>DroSim_CAF1 951 118 + 1
UAUUGUGCAGUUAACUACUUGCCUGUUACCAACAUGCAGCAAAGGCGCAAGUCCAAACUGCUUGGCCACUUGGCGCGCAUUUUGAUUAUUCAUUCAAACAUUUAUUGUAUUCACUUUG
...((((((((.....))).(((.((..((((...((((....(((....)))....))))))))..))..)))))))).(((((........))))).................... ( -27.50)
>DroEre_CAF1 3388 104 + 1
UCGUAAGCAGUUAUCUACUUGCAUGUCGUUAACGUCUAGCAGAGACGCAAGCCCAAACUGCUUGGCCACAUGGCGCGCAUUUCGAAUUUCAAUCAAAAAAUGCC--------------
...(((((((((.....(((((.(.((((((.....)))).)).).)))))....)))))))))(((....)))..((((((.((.......))...)))))).-------------- ( -27.20)
>consensus
UAUUGUGCAGUUAACUACUUGCCUGUUACCAACAUGCAGCAAAGGCGCAAGUCCAAACUGCUUGGCCACUUGGCGCGCAUUUUGAUUAUUCAUUCAAACAUUUAUUGUAUUCAUUUUG
...(((((........................((.((((....(((....)))....)))).))(((....))))))))....................................... (-18.83 = -19.45 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:10 2006