| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,253,061 – 13,253,180 |
| Length | 119 |
| Max. P | 0.524549 |
| Location | 13,253,061 – 13,253,180 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.75 |
| Mean single sequence MFE | -49.10 |
| Consensus MFE | -30.88 |
| Energy contribution | -32.50 |
| Covariance contribution | 1.62 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524549 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13253061 119 - 22224390 C-GGCGGUCCAAUGUCGGACCUGCGCCGAUUAUCGUUUCUGGUCAUUCCGUCUGGGGCUCCGUUGCUGCCCUUCUGCUGAGUGGUUAUCGUGCAUAUGGUAUUGUUUCCGCUCAUGCGGA (-((((((((......)))))...))))............((.....))....(((((.........)))))((((((((((((..((.((((.....)))).))..))))))).))))) ( -43.90) >DroSim_CAF1 9468 119 - 1 C-GAGGGUCCAAUGUCAGAUCUGCGGCGAUUAUCGUUCCUGGCCAUUCCGUCCGUGGCUCCGUUGCUGCCCUUCUGCUGGGUGGUUAUCGUGCAUAUGGUAUUGUUUCCGCUCAUGCGGG .-((((((.(((((.(((....((((......))))..)))(((((.......)))))..)))))..))))))(((((((((((..((.((((.....)))).))..))))))).)))). ( -40.40) >DroYak_CAF1 9504 119 - 1 G-GAGGGUCCCAUGUCGGAGCGGCGACGAUUGUCGCUCCUGGCCAUGCCGUCCAUGGCGCCGUUGCUGCCCUUCUGCUGCGUGGUGAUCGUGCAUAUCGUAUUGUUGCCGCUCAUGCGAA (-((((((..((((.(((((((((((...))))))))))..((((((.....))))))).)).))..)))))))(((((.((((..((.((((.....)))).))..)))).)).))).. ( -53.30) >DroAna_CAF1 12917 117 - 1 CAGUGGGUCCCAGAUCGGAGCGGCGGCGG---UCCAUCCGGUUCAUGUUGUCCAUGGCGCCGUUGUUGCCCUUCUGCUGGGUGGUGAUGGUGCAGAUGGUGUUGUUGCCGCUCAUCCGGG ........(((.(((..((((((((((..---((((((.....((((.....))))(((((((..(..(((.......)))..)..))))))).))))).)..))))))))))))).))) ( -58.80) >consensus C_GAGGGUCCAAUGUCGGAGCGGCGGCGAUUAUCGUUCCUGGCCAUGCCGUCCAUGGCGCCGUUGCUGCCCUUCUGCUGGGUGGUGAUCGUGCAUAUGGUAUUGUUGCCGCUCAUGCGGA ..((((((((......))).((((((((.....((....))((((((.....))))))..)))))))))))))(((((((((((..((..(((.....)))..))..))))))).)))). (-30.88 = -32.50 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:08 2006