| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,252,127 – 13,252,223 |
| Length | 96 |
| Max. P | 0.530156 |
| Location | 13,252,127 – 13,252,223 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 92.42 |
| Mean single sequence MFE | -20.83 |
| Consensus MFE | -19.30 |
| Energy contribution | -19.29 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.93 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.530156 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13252127 96 - 22224390 CUCCU------CCGGCUCGGCUUCCAGCUCCUCCUCGUCCAUCUCAGCAUCGCUGUCGCUUUCCUCAUCCAGUUGCUCGCCCUCAUCCGAGUCCGGUUCACC .....------(((((((((......((................((((...))))..((...............))..))......))))).))))...... ( -19.66) >DroSec_CAF1 8516 96 - 1 CUCCU------CCGGCUCGGCUUCCAGCUCCUCCUCGUCCAUCUCAGCAUCGCUGUCGCUUUCCUCAUCCAGUUGCUCGCCCUCAUCCGAGUCCGGCUCACC .....------(((((((((......((................((((...))))..((...............))..))......))))).))))...... ( -19.46) >DroSim_CAF1 8536 95 - 1 CUCCU------CCGGCUCGGCUUCCAGCUCCUCCUCGUCCAUCUCAGCAUCGCUGUCGCUUU-CUCAUCCAGUUGCUCGCCCUCAUCCGAGUCCGGUUCACC .....------(((((((((......((................((((...))))..((...-((.....))..))..))......))))).))))...... ( -20.30) >DroYak_CAF1 8561 102 - 1 CUCCUCCGCCUCCGGCUCGGCCUCCAGCUCCUCCUCGUCCAACUCAGCAUCGCUGUCAGUGUCCACAUCCAGUUGCUCGCCCUCAUCCGAGUCCGGUUCGCC .......((..(((((((((......((........(.....)..((((..((((...(((....))).)))))))).))......))))).))))...)). ( -23.90) >consensus CUCCU______CCGGCUCGGCUUCCAGCUCCUCCUCGUCCAUCUCAGCAUCGCUGUCGCUUUCCUCAUCCAGUUGCUCGCCCUCAUCCGAGUCCGGUUCACC ...........((((((((((...(((((...............((((...))))...............)))))...))).......))).))))...... (-19.30 = -19.29 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:07 2006