Locus 5059

Sequence ID X_DroMel_CAF1
Location 13,250,174 – 13,250,275
Length 101
Max. P 0.904424
window8226

overview

Window 6

Location 13,250,174 – 13,250,275
Length 101
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 79.87
Mean single sequence MFE -32.13
Consensus MFE -25.13
Energy contribution -24.80
Covariance contribution -0.33
Combinations/Pair 1.14
Mean z-score -1.86
Structure conservation index 0.78
SVM decision value 1.04
SVM RNA-class probability 0.904424
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13250174 101 - 22224390
-UGGGUGG--UUCUACCUUUGGCGGUGCCUCUACCUUGGUCGGCACCUUCUUCAGCUUUUUCUUGUUCUUCUCAUCGAGACGCAACUGGGCGUUUGCCAAAUCC
-.(((((.--...)))))(((((((((((...((....)).)))))).......((((....((((((((......)))).))))..))))....))))).... ( -30.10)
>DroEre_CAF1 6663 95 - 1
-UGGGUAAAAGACU--------GGGUGCCUCCGCCUUGGGCGGCACCUUCUUCAGCUUUUUCUUGCUCUUCUCCUCGAGACGCAUCUGGGCAUUGGCCAUAUCC
-(((.(((((((..--------(((((((.((......)).)))))))))))..((((.....(((((((......)))).)))...)))).))).)))..... ( -30.70)
>DroYak_CAF1 6594 96 - 1
AUGGGCACUGGACU--------GGGUGCCUCCACCUUGGGCGGCACCUUCUUCAGCUUCUUCUUGCUCUUCUCCUCGAGACGCAUCUGGGCAUUGGCCUUGUCC
..((((((((((..--------((((((((((.....))).)))))))..)))))........(((((((......)))).)))...((((....))))))))) ( -35.60)
>consensus
_UGGGUAA__GACU________GGGUGCCUCCACCUUGGGCGGCACCUUCUUCAGCUUUUUCUUGCUCUUCUCCUCGAGACGCAUCUGGGCAUUGGCCAUAUCC
...(((.................((((((.((......)).)))))).......((((.....(((((((......)))).)))...))))....)))...... (-25.13 = -24.80 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:06 2006