Locus 5058

Sequence ID X_DroMel_CAF1
Location 13,249,659 – 13,249,775
Length 116
Max. P 0.642347
window8225

overview

Window 5

Location 13,249,659 – 13,249,775
Length 116
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 94.54
Mean single sequence MFE -29.13
Consensus MFE -24.67
Energy contribution -24.57
Covariance contribution -0.10
Combinations/Pair 1.13
Mean z-score -2.15
Structure conservation index 0.85
SVM decision value 0.23
SVM RNA-class probability 0.642347
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13249659 116 + 22224390
AAGGAGAAGGCAAUGGAAAAUCCGGCCAGGUCUUCGCCAGCAAUUGUGGAUAAAAAAGUACGCGCAGGUGAAAUGGAAAAGAAGGUCGUAAAAUCCACGAAAGGGACUGUUCCAGA
..((((..(((...((.....)).))).(..((((.(((.((.(((((..((......))..))))).))...)))....))))..)......(((.(....))))...))))... ( -31.80)
>DroSec_CAF1 6101 116 + 1
AAGGAGAAGGUAAUGGAAAAACCGGCCAGGUCCUCGCCAGCAAUUGCGGAUAAAAAAGUACGUGCAGGUGAAAUAGAUAAGAAAGUCGUAAAAUCCACAAAAGGGACUGUUCCAGA
..((((..(((...((.....)).))).((((((((((.(((..(((..........)))..))).)))))....(((......)))................))))).))))... ( -27.60)
>DroSim_CAF1 6121 116 + 1
AAGGAGAAGGUAAUGGAAAAACCGGCCAGGUCCUCGCCAGCAAUUGUGGAUAAAAAAGUACGUGCAGGUGAAAUAGACAAGAAGGUCGUAAAAUCCACAAAAGGGACUGUUCCAGA
..((((..(((...((.....)).))).((((((.(....)..((((((((.......(((......))).....(((......))).....))))))))..)))))).))))... ( -28.00)
>consensus
AAGGAGAAGGUAAUGGAAAAACCGGCCAGGUCCUCGCCAGCAAUUGUGGAUAAAAAAGUACGUGCAGGUGAAAUAGAAAAGAAGGUCGUAAAAUCCACAAAAGGGACUGUUCCAGA
..((((..(((...((.....)).))).((((((.(....)..((((((((.......(((......))).....(((......))).....))))))))..)))))).))))... (-24.67 = -24.57 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:05 2006