| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,249,290 – 13,249,407 |
| Length | 117 |
| Max. P | 0.519011 |
| Location | 13,249,290 – 13,249,407 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.37 |
| Mean single sequence MFE | -33.78 |
| Consensus MFE | -16.00 |
| Energy contribution | -15.32 |
| Covariance contribution | -0.68 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.47 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.519011 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13249290 117 - 22224390 CUUUUCUUCCGUUGACAAUGAUGUUUC---UAAUAGUACCGGUCCACUUACACUUUCCAGGGUGCAACAUUCUGGCGGCACAAGUGGAGACGACGUCGUUUCCACUUCGGCGGAUAAAAU ..(((..((((((((............---.....((.(((((......)).....((((((((...))))))))))).)).((((((((((....))))))))))))))))))..))). ( -38.30) >DroSec_CAF1 5720 117 - 1 CUUUUCUUCUGUUGACAGUGACGAUUG---UGAUAGUACCGUUCCACUUACUUUUCCUAGGGUGUCAAAUUCUGGCUGCACAAGUGGAGACGGCUUCGUUUCCACUUCGGCUAAUAAAGU ...........(((((((((..(((.(---((....))).))).)))).(((((....))))))))))....((((((...(((((((((((....)))))))))))))))))....... ( -30.80) >DroSim_CAF1 5752 117 - 1 CUUUUCUUCUGUUGACAGUGACGAUUC---UAAUAGUACCUUUCCACUUACUUUUCCUAGGGUGUCACAUUCUGGCUGCACAAGUGGAGACGGCUUCGUUUCCACUUCGGCUAAUAAAGU .................(((((.((((---((..((((..........)))).....)))))))))))....((((((...(((((((((((....)))))))))))))))))....... ( -32.60) >DroEre_CAF1 5827 120 - 1 CUUUUCUACUGUUGAGAGUGACGUUUGAUCGGCUAGUACUUCUCCAAUUGCCUUAUCUCGGGUGUCUGAUUCUGAAAGCAAAAGCGGAGCCGCUAUCGAUUCCUCUUCAAUAUGUGGAAU ...(((((((((((((((.((...((((((((((..........((..(((((......)))))..)).........((....))..)))))..))))).))))).)))))).)))))). ( -31.90) >DroYak_CAF1 5704 120 - 1 CUUUUCUACUGCUGACAGUGACGUUUGGUCGUCGUGUGCUUCUCCGAUUGCUCUAUCUCGGGUGUCAUGAACAAAAAGCACUGGUGGAGCCGCUUUUGCUUUCACUUCAAUAGGUGGAAU ...(((((((..(((.(((((..((((....(((((.((...(((((..........))))).))))))).))))(((((..((((....))))..)))))))))))))...))))))). ( -35.30) >consensus CUUUUCUUCUGUUGACAGUGACGUUUG___UAAUAGUACCUCUCCACUUACUUUUUCUAGGGUGUCACAUUCUGGCAGCACAAGUGGAGACGCCUUCGUUUCCACUUCGGCAAAUAAAAU ..........(((((.................................(((((......)))))..................((((((((((....)))))))))))))))......... (-16.00 = -15.32 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:04 2006