Locus 5054

Sequence ID X_DroMel_CAF1
Location 13,244,805 – 13,244,915
Length 110
Max. P 0.848965
window8221

overview

Window 1

Location 13,244,805 – 13,244,915
Length 110
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 66.25
Mean single sequence MFE -27.93
Consensus MFE -12.08
Energy contribution -12.76
Covariance contribution 0.68
Combinations/Pair 1.14
Mean z-score -1.90
Structure conservation index 0.43
SVM decision value 0.78
SVM RNA-class probability 0.848965
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13244805 110 + 22224390
CUGACUUUGAGCUUAAGCAAAAUCGGUU----AACCGAUGAGCCCGGAACAUUGAGCCCAUUGUGCAAUGCGUGAAUUAACGUAUUUACUCUGGCCAAACAGAGUUA----UGGUUAA--
.((((((((.((((((((...(((((..----..)))))..))........))))))(((..(((.(((((((......))))))))))..))).....))))))))----.......-- ( -31.30)
>DroSec_CAF1 1226 83 + 1
CUGACUUUGA-------------------------------GCCCGGAACAUUGAGCCCAUUGUGCAAUGCGUGAAUUAACGUAUUUGCUCGGGCCAAACGGAGUUA----UGGUUAA--
.(((((...(-------------------------------(((((.....(((.((((...(.(((((((((......))))).)))).)))))))).))).))).----.))))).-- ( -27.20)
>DroSim_CAF1 1262 83 + 1
CUGACUUUGA-------------------------------GCCCGGCACAUUGAGCCCAUUGUGCAAUGCGUGAAUUAACGUAUUUGCUCGGGCCAAACAGAGUUA----UGGUUAA--
.((((((((.-------------------------------((((((((((.((....)).)))))(((((((......)))))))....)))))....))))))))----.......-- ( -31.00)
>DroEre_CAF1 1268 115 + 1
CCGACUUUGAGCU-AAGCAAAAUCUGUU----AACCAAUGAGCCCGGUACAUGGAGUCUAUUGUGCAAUGCGUAAAUUUUCGUAUUUGCACUGGCCAAACGGAGUUUACCCUGUUUACCC
.......(((((.-........((((((----..((((((..((((.....))).)..))))((((((((((........)))).)))))).))...)))))).........)))))... ( -25.17)
>DroYak_CAF1 1163 100 + 1
CCGACUUUGAGCUUCAGCAAAAUCCACUGCCAAGCCAUUGAAC----------------AUUGUGCAAUGCGUUUAUACUCGUAUUUGCACUGGCCAAACAGAGUUA----UGGUAAAUU
(((((((((.((((..(((........))).))))..(((..(----------------(..((((((((((........)))).))))))))..))).))))))).----.))...... ( -25.00)
>consensus
CUGACUUUGAGCU__AGCAAAAUC___U____A_CC__UGAGCCCGGAACAUUGAGCCCAUUGUGCAAUGCGUGAAUUAACGUAUUUGCUCUGGCCAAACAGAGUUA____UGGUUAA__
..(((((((.((....)).....................................(((....(((.(((((((......))))))))))...)))....))))))).............. (-12.08 = -12.76 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:01 2006