Locus 5052

Sequence ID X_DroMel_CAF1
Location 13,229,752 – 13,229,865
Length 113
Max. P 0.740591
window8218

overview

Window 8

Location 13,229,752 – 13,229,865
Length 113
Sequences 3
Columns 113
Reading direction reverse
Mean pairwise identity 65.49
Mean single sequence MFE -21.54
Consensus MFE -10.03
Energy contribution -10.03
Covariance contribution 0.00
Combinations/Pair 1.12
Mean z-score -1.92
Structure conservation index 0.47
SVM decision value 0.45
SVM RNA-class probability 0.740591
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13229752 113 - 22224390
CCCAACGUGUGUACUUUUCCAUUAAAAGUGAGUACACAAUGAAAUAGCUACAAUGGGAUGUCUAUAUUAUAUAGUAAAUAUACUAUAUACAUACUUGGAUUUGUGUCCGAAGA
((((...(((((((((.............))))))))).((.........)).))))...(((....(((((((((....))))))))).....((((((....))))))))) ( -25.32)
>DroSec_CAF1 10596 91 - 1
----------------------UAAAAGUGAGUACACAAUGAAAAAGAUAAAAUGGGAUGUCUAUAUCAUAUAGUUAAUAUACUAUAUACACACCUGGAUUUGUGUCCGAGGA
----------------------.....(((..........((.(.(((((........))))).).))(((((((......))))))).))).(((((((....)))).))). ( -18.10)
>DroYak_CAF1 12177 93 - 1
CCCAACGUGUGUACUUUUCCAUUGAAAGUGAGUACACA----------------AUGGUUGCUAUAUUAUAUAGUUUAUAUACUAUC----CACUUGGAUUUGUGUCUGCAGA
..((((.((((((((((((....)))...)))))))))----------------...))))............((..(((((..(((----(....)))).)))))..))... ( -21.20)
>consensus
CCCAACGUGUGUACUUUUCCAUUAAAAGUGAGUACACAAUGAAA_AG_UA_AAUGGGAUGUCUAUAUUAUAUAGUUAAUAUACUAUAUACACACUUGGAUUUGUGUCCGAAGA
...........................(((....)))...............................(((((((......))))))).....(((((((....))))).)). (-10.03 = -10.03 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:58 2006