Locus 5051

Sequence ID X_DroMel_CAF1
Location 13,225,569 – 13,225,665
Length 96
Max. P 0.938584
window8217

overview

Window 7

Location 13,225,569 – 13,225,665
Length 96
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 80.29
Mean single sequence MFE -25.17
Consensus MFE -18.41
Energy contribution -18.30
Covariance contribution -0.11
Combinations/Pair 1.10
Mean z-score -2.14
Structure conservation index 0.73
SVM decision value 1.29
SVM RNA-class probability 0.938584
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13225569 96 - 22224390
AUGCUGAAUGGUGUUUAUUGGCGAGUCAGCGGCACGUGUGGCUCUCCAAGUGAAAAACACAAAAAAAAAAAAGCGAACACCAAGAAUACACCAGUA
.(((((..((((((((.((((.(((((((((...))).)))))).))))(((.....)))..............)))))))).(....)..))))) ( -27.50)
>DroEre_CAF1 8637 86 - 1
ACGCUGAAUGGUGUUUAUUGGCGAGUCAGCGGCACGUGUGGCUCUCCAAGUGGAAAACCAUA---------AGGGAACCAGAACUAUAUAC-GUAU
.((((((....((((....))))..))))))..((((((((.((.((..((((....)))).---------.)))).)))........)))-)).. ( -24.00)
>DroYak_CAF1 7967 87 - 1
AGGCUGAAUGGUGUUUAUUGGCGAGUCAGCGGCACGUGUGGCUCUCCAAGUGGAAAACAAAA---------AGGGAACGGCAAGAAUACACCAGAA
........((((((...(((.((((((((((...))).))))))(((...((.....))...---------..)))..).)))....))))))... ( -24.00)
>consensus
ACGCUGAAUGGUGUUUAUUGGCGAGUCAGCGGCACGUGUGGCUCUCCAAGUGGAAAACAAAA_________AGGGAACAACAAGAAUACACCAGAA
........((((((...((((.(((((((((...))).)))))).))))((.....)).............................))))))... (-18.41 = -18.30 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:57 2006