| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,223,360 – 13,223,456 |
| Length | 96 |
| Max. P | 0.693004 |
| Location | 13,223,360 – 13,223,456 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 83.84 |
| Mean single sequence MFE | -17.81 |
| Consensus MFE | -11.84 |
| Energy contribution | -13.46 |
| Covariance contribution | 1.62 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.693004 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13223360 96 + 22224390 GAAGUUUUUUAUUAAAUAUAUAUAGGAUUUGAUUAGAGGC----ACAUCUCAAAGACUCUUAUCAUAUCAUGAAAAUAUUUUGACAACACGUCAUCCAGU .............((((((......(((.((((.((((..----............)))).)))).)))......))))))((((.....))))...... ( -13.64) >DroSec_CAF1 4219 96 + 1 GAAGACUUCUAUUAAAUAUUUCUAAGAUUUGAUUAGAGGC----ACAUCUAAAAGCCUCUUAUCAUAUCAUGAAAAUAUUUUGGCAACACGUCAUCCAGU ((.(((.......((((((((.((.(((.((((.((((((----..........)))))).)))).))).)).))))))))((....)).))).)).... ( -24.40) >DroSim_CAF1 4209 96 + 1 GAAAACUUAUAUUAAAUAUUUCUAAGAUUUGAUUAGAGGC----ACAUCUAAAAGCCUCUUAUCAUAUCAUGAAAAUAUUUUGGCAACACGUCAUCCAAU .............((((((((.((.(((.((((.((((((----..........)))))).)))).))).)).))))))))((((.....))))...... ( -21.50) >DroYak_CAF1 5328 93 + 1 --AGGCU-----UUAUUAUUUUUUAGAUUUGAUUUGAGGCAACCACAUUUAAGAGACACUUAUCGUAUCAUGAAAAUAUUUUGGCAACACGUCAUCCAGU --..(((-----..(.(((((((..(((.(((..((.(....)))....((((.....))))))).)))..))))))).)..)))............... ( -11.70) >consensus GAAGACUU_UAUUAAAUAUUUCUAAGAUUUGAUUAGAGGC____ACAUCUAAAAGACUCUUAUCAUAUCAUGAAAAUAUUUUGGCAACACGUCAUCCAGU .............((((((((.((.(((.((((.((((((..............)))))).)))).))).)).))))))))((((.....))))...... (-11.84 = -13.46 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:56 2006