Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,439,408 – 1,439,518 |
Length | 110 |
Max. P | 0.983542 |
Location | 1,439,408 – 1,439,518 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 99.39 |
Mean single sequence MFE | -25.63 |
Consensus MFE | -25.40 |
Energy contribution | -25.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.84 |
Structure conservation index | 0.99 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983542 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1439408 110 + 22224390 CGAAGGAGCGCAAGAACGAAAAGGAAAACGCGAAAAAGAAAAUGUUCGCGCGAGAAAUGUUAAAAAAUAUUUUUAUAGCUCCGCGAAUGUUAGAAUAGUGUUUGUGGGGG .......((((.....((....(.....).)).....(((....))))))).(((((((((....)))))))))....(((((((((..(((...)))..))))))))). ( -25.40) >DroSec_CAF1 44162 110 + 1 CGAAGGAGCGCAAGAACGAAAAGGAAAACGCGAAAAAGAAAAUGUUCGCGCGAGAAAUGUUAAAAAAUAUUUUUAUAGCUCCGCGAAUGUUAGAAUAGUGUUUGUGGGGG .......((((.....((....(.....).)).....(((....))))))).(((((((((....)))))))))....(((((((((..(((...)))..))))))))). ( -25.40) >DroEre_CAF1 41066 110 + 1 CGAAAGAGCGCAAGAACGAAAAGGAAAACGCGAAAAAGAAAAUGUUCGCGCGAGAAAUGUUAAAAAAUAUUUUUAUAGCUCCGCGAAUGUUAGAAUAGUGUUUGUGGGGG (....).((((.....((....(.....).)).....(((....))))))).(((((((((....)))))))))....(((((((((..(((...)))..))))))))). ( -26.10) >consensus CGAAGGAGCGCAAGAACGAAAAGGAAAACGCGAAAAAGAAAAUGUUCGCGCGAGAAAUGUUAAAAAAUAUUUUUAUAGCUCCGCGAAUGUUAGAAUAGUGUUUGUGGGGG .......((((.....((....(.....).)).....(((....))))))).(((((((((....)))))))))....(((((((((..(((...)))..))))))))). (-25.40 = -25.40 + 0.00)
Location | 1,439,408 – 1,439,518 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 99.39 |
Mean single sequence MFE | -16.67 |
Consensus MFE | -16.49 |
Energy contribution | -16.27 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.07 |
Mean z-score | -1.96 |
Structure conservation index | 0.99 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.881228 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1439408 110 - 22224390 CCCCCACAAACACUAUUCUAACAUUCGCGGAGCUAUAAAAAUAUUUUUUAACAUUUCUCGCGCGAACAUUUUCUUUUUCGCGUUUUCCUUUUCGUUCUUGCGCUCCUUCG ............................(((((..........................(((((((.(......).)))))))..........((....))))))).... ( -17.20) >DroSec_CAF1 44162 110 - 1 CCCCCACAAACACUAUUCUAACAUUCGCGGAGCUAUAAAAAUAUUUUUUAACAUUUCUCGCGCGAACAUUUUCUUUUUCGCGUUUUCCUUUUCGUUCUUGCGCUCCUUCG ............................(((((..........................(((((((.(......).)))))))..........((....))))))).... ( -17.20) >DroEre_CAF1 41066 110 - 1 CCCCCACAAACACUAUUCUAACAUUCGCGGAGCUAUAAAAAUAUUUUUUAACAUUUCUCGCGCGAACAUUUUCUUUUUCGCGUUUUCCUUUUCGUUCUUGCGCUCUUUCG .........................((((((((..(((((.....))))).........(((((((.(......).)))))))..........)))).))))........ ( -15.60) >consensus CCCCCACAAACACUAUUCUAACAUUCGCGGAGCUAUAAAAAUAUUUUUUAACAUUUCUCGCGCGAACAUUUUCUUUUUCGCGUUUUCCUUUUCGUUCUUGCGCUCCUUCG ............................(((((..........................(((((((.(......).)))))))..........((....))))))).... (-16.49 = -16.27 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:16 2006