| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,222,575 – 13,222,685 |
| Length | 110 |
| Max. P | 0.937515 |
| Location | 13,222,575 – 13,222,685 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 79.35 |
| Mean single sequence MFE | -24.33 |
| Consensus MFE | -14.54 |
| Energy contribution | -14.32 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.937515 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13222575 110 + 22224390 CCCACCCAUUACCGCAUCUUCUACGACAACAUCAUCAGCCUGGGCUACGAUGUGCUGACCUCGAAGGUUAAGCACAAACAGUCGCAUUCGCAUCUGAAGAAGAUUCCCUA .............(.(((((((.((((.........(((....)))....((((((((((.....)))).))))))....)))((....))....).))))))).).... ( -28.10) >DroVir_CAF1 5137 96 + 1 CCCACACACUAUCGCAUCUUCUACGAUAAUGUGAUCAGUCUCGGCUACGAUGUGUUCACAUCGAAGGUGAAGCAUUCACCCUCA------CAUCUGCC--------CAUG ....((((.(((((.........))))).)))).........(((...(((((....)))))((.(((((.....))))).)).------.....)))--------.... ( -26.00) >DroPse_CAF1 5163 104 + 1 CCCACCCACUACCGCAUCUUCUACGACAACAUCAUCAGCCUGGGCUACGACGUGCUCACGUCGAAGGUGAAGCACACAAAGUCGCA----CAU--CAAAAAAAUUCCCUA ..............(((((((...............(((....)))..(((((....))))))))))))..((((.....)).)).----...--............... ( -20.40) >DroEre_CAF1 5726 110 + 1 CCCACCCAUUAUCGCAUCUUCUACGACAAUAUCAUCAGCCUGGGCUACGAUGUGCUGACCUCAAAAGUCAAGCACAAACAGUCGCAUUCGCAUCUAAAGAAGAUUCCCUA .............(.(((((((..(((.........(((....)))....(((((((((.......))).))))))....)))((....))......))))))).).... ( -25.90) >DroAna_CAF1 4742 104 + 1 CCCACCCACUACCGCAUCUUCUACGACAACAUCAUUAGCCUGGGCUACGACGUCCUCACCUCCAAGGUGAAGCACAAGCAGACG------CACCUGAAGAAGCUACCCUA .............((.(((((..............((((....)))).(.((((.(((((.....))))).((....)).))))------)....))))).))....... ( -25.20) >DroPer_CAF1 5223 104 + 1 CCCACCCACUACCGCAUCUUCUACGACAACAUCAUCAGCCUCGGCUACGACGUGCUCACGUCGAAGGUGAAGCACACAAAGUCGCA----CAU--CAAAAAAAUUCCCUA ..............(((((((...............(((....)))..(((((....))))))))))))..((((.....)).)).----...--............... ( -20.40) >consensus CCCACCCACUACCGCAUCUUCUACGACAACAUCAUCAGCCUGGGCUACGACGUGCUCACCUCGAAGGUGAAGCACAAACAGUCGCA____CAUCUGAAGAAGAUUCCCUA .......................((((.........(((....))).....((((((((.......))).))))).....)))).......................... (-14.54 = -14.32 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:56 2006