Locus 5047

Sequence ID X_DroMel_CAF1
Location 13,216,997 – 13,217,089
Length 92
Max. P 0.702970
window8213

overview

Window 3

Location 13,216,997 – 13,217,089
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 93.46
Mean single sequence MFE -25.48
Consensus MFE -20.50
Energy contribution -20.38
Covariance contribution -0.12
Combinations/Pair 1.10
Mean z-score -1.57
Structure conservation index 0.80
SVM decision value 0.36
SVM RNA-class probability 0.702970
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13216997 92 + 22224390
UAUAGUUAGGUGACUGUGGGUGGUGUUCGGUCUGGUUUUGGGUGCAUUAUUCUUGAAGCUGCGGAGCCGAAGACGUUGCUGAUGAUUCAUUU
(((((((....)))))))(((..(((((((((((((((..((.........))..))))..)))).))))..)))..)))............ ( -24.10)
>DroSec_CAF1 8641 92 + 1
UAUAGUUAGGUGACUGUGGGUGGUGGUCGGUCUGGUUUUGGGUGCAUUAUUCUUAAAGCUGCGGAGCCGAAAACGUUGCUGAUGAUUCAUUU
(((((((....)))))))(((..((.((((((((((((((((.........))))))))..)))).))))...))..)))............ ( -24.00)
>DroSim_CAF1 10640 92 + 1
UGUAGUUAGGUGACUGUGGGUGGUGGUCGGUCUGGUUUUGGGUGCAUUAUUCUUAAAGCUGCGGAGCCGAAAACGUUGCUGAUGAUUAAUUU
..(((((((....))((.(((..((.((((((((((((((((.........))))))))..)))).))))...))..))).))))))).... ( -24.60)
>DroEre_CAF1 8847 89 + 1
UAUAGUUAGGUGACUGUGAGUGGU--UCGGUCUGGUUUUGGGUGCAUUAUUCUUGAAGCUGCGGAGCCGGA-UCGUUGCUGAUGAUUCAUUU
......(((....)))(((((.((--((((((((((((((.(.((.(((....))).))).))))))))))-))).....))).)))))... ( -28.80)
>DroYak_CAF1 8724 90 + 1
UAUGGUUAGGUGAUUGUGAGUGGU--UCGGUCUGGUUUUGGGUGCAUUAUUCUUGAAGCUGCGGAGCCGGAGACGUUGCUGAUGAUUCAUUU
.......(((((((..(.((((((--((.((..(((((..((.........))..))))))).)))))(....)...))).)..).)))))) ( -25.90)
>consensus
UAUAGUUAGGUGACUGUGGGUGGUG_UCGGUCUGGUUUUGGGUGCAUUAUUCUUGAAGCUGCGGAGCCGAAAACGUUGCUGAUGAUUCAUUU
.......((((((..((.(((..((.((((((((((((((((.........))))))))..)))).))))...))..))).))...)))))) (-20.50 = -20.38 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:54 2006