Locus 5045

Sequence ID X_DroMel_CAF1
Location 13,204,100 – 13,204,198
Length 98
Max. P 0.633825
window8210

overview

Window 0

Location 13,204,100 – 13,204,198
Length 98
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 80.64
Mean single sequence MFE -36.97
Consensus MFE -24.02
Energy contribution -26.13
Covariance contribution 2.12
Combinations/Pair 1.22
Mean z-score -1.57
Structure conservation index 0.65
SVM decision value 0.21
SVM RNA-class probability 0.633825
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13204100 98 - 22224390
AGUGGUGACUGCGGGCGUGGUCAUCGCUGGAUUUGUGGGCGGGAUCGUUAGCGGUAUCGUCGGCGGCAUCGGGUGAUAAAUGUGCUGCUCCUGAUGA---A
(((((((((..(....)..)))))))))....((((.((((..((((....))))..)))).))))(((((((.(............).))))))).---. ( -39.00)
>DroSec_CAF1 32582 95 - 1
---GGUGACCGCGGGCGUGGUCAUCGCUGGAUUUGUGGGCGGGAUCGUUAACGGUAUCGUCGGCGGCAUCGGGUGAUAAAUGUGCUGCUCCUGGUGA---A
---(((((((((....)))))))))((..(.......((((..((((....))))..))))((((((((............)))))))).)..))..---. ( -37.60)
>DroSim_CAF1 33201 95 - 1
---GGUGACUGCGGGCGUGGUCAUCGCUGGAUUUGUGGGCGGGAUCGUUAGCGGUAUCGUCGGCGGCAUCGGGUGAUAAAUGUGCUGCUCCUGGUGA---A
---(....)..((((.(..(((((((((.(((((((.((((..((((....))))..)))).)))).))).)))))....)).))..).))))....---. ( -35.40)
>DroEre_CAF1 41777 95 - 1
---GGUGACCGCGGGCGUGGUCAUCGCUGGAUUUGUGGGCGGGAUCGUUAGCGGUAUCGUCGGCGGCAUCGGGUGAUAAAUGUGCUGCUCCUGGUGA---A
---(((((((((....)))))))))((..(.......((((..((((....))))..))))((((((((............)))))))).)..))..---. ( -37.90)
>DroYak_CAF1 41070 98 - 1
---GGUGACCGCGGGCGUGGUCAUUGCUGGAUUUGUGGGCGGUAUCGUUAGCGGUAUCGUCGGCGGCAACGAUGGGUAAAUGUGCUGCUCCUGGUGAAGAA
---(((((((((....)))))))))((..(.......((((((((((....))))))))))(((((((...((......)).))))))).)..))...... ( -39.00)
>DroAna_CAF1 54956 86 - 1
---GAUGCUGGAGGGCGUGGCCGU----GAAACUGUUCACGGG--------CGGCUGGAGCGGCGGCAUUGAUGGAUACAUGGGCUGAUCCUGGCGCAUCA
---(((((.....(((.((.((((----(((....))))))).--------)))))(((....((((....(((....)))..)))).)))....))))). ( -32.90)
>consensus
___GGUGACCGCGGGCGUGGUCAUCGCUGGAUUUGUGGGCGGGAUCGUUAGCGGUAUCGUCGGCGGCAUCGGGUGAUAAAUGUGCUGCUCCUGGUGA___A
...........((((.((((((((((((.(((((((.(((((.((((....)))).))))).)))).))).)))))....)).))))).))))........ (-24.02 = -26.13 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:51 2006