Locus 5037

Sequence ID X_DroMel_CAF1
Location 13,182,806 – 13,182,925
Length 119
Max. P 0.934157
window8198

overview

Window 8

Location 13,182,806 – 13,182,925
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.68
Mean single sequence MFE -22.46
Consensus MFE -4.18
Energy contribution -5.78
Covariance contribution 1.60
Combinations/Pair 1.00
Mean z-score -2.10
Structure conservation index 0.19
SVM decision value 1.23
SVM RNA-class probability 0.934157
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13182806 119 + 22224390
GCGUACAAAUAUAAAAAUGCUUUUUCCAGCUGCGUCCCGCCAAC-GAAAUCGCAAUAAAUAAACAAUGGGCAAAUGUAAUGCCAAAAGCAGCUGAAAGGUUCGAAAUUAAUUGUCAAUAA
..(.((((.((.......((((((..(((((((..........(-(....))................((((.......))))....))))))))))))).......)).)))))..... ( -23.44)
>DroSec_CAF1 12611 118 + 1
GCGUACAAAUAUAAAAAUGAUUUUUCCAGCUGCGUCCCGCCAGC-GAAAUCGCAAUAAAUAAACAAUGG-AAAAUGUAAUGCCAAAAGCAGCUGAAAGGUUCGAAAUUAAUUGUCAAUAA
..(.((((.((.......((((((((.((((((.....((..((-(....))).........(((.(..-..).)))...)).....))))))))))))))......)).)))))..... ( -23.62)
>DroSim_CAF1 12640 118 + 1
GCGUACAAAUAUAAAAAUGAUUUUUCCAGCUGCGUCCCGCCAGC-GAAAUCGCAAUAAAUAAACAAUGG-AAAAUGUAAUGCCAAAAGCAGCUGAAAGGUUCGAAAUUAAUUGUCAAUAA
..(.((((.((.......((((((((.((((((.....((..((-(....))).........(((.(..-..).)))...)).....))))))))))))))......)).)))))..... ( -23.62)
>DroEre_CAF1 16666 118 + 1
GCAGACAAAUACAAAAAUUAUUUUUCCAGCUGCGUCCCGCCAGC-GGAAUUGCAAUAAAUAAACAAUGG-AAAAUGUAAUGCCAAAAGCAGCGGAAAGGUUCGAAAUUAAUUGUCAAUAA
...(((((...........((((((((.(((((...(((....)-)).((((((...............-....)))))).......)))))))))))))..........)))))..... ( -27.01)
>DroAna_CAF1 22126 99 + 1
ACAAACAAGGACAAAACAA--------------------ACAACAACAAUGACGAAAAGUUGACAGAUU-AAAAAUUAAUGUUAAACUCAGCUGUAGACCGCUGAAAUUAUUGUCAAUAA
...................--------------------..........((((((....((((((....-.........))))))..(((((.(....).))))).....)))))).... ( -14.62)
>consensus
GCGUACAAAUAUAAAAAUGAUUUUUCCAGCUGCGUCCCGCCAGC_GAAAUCGCAAUAAAUAAACAAUGG_AAAAUGUAAUGCCAAAAGCAGCUGAAAGGUUCGAAAUUAAUUGUCAAUAA
..........................(((((((......................................................))))))).......................... ( -4.18 =  -5.78 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:40 2006