Locus 5036

Sequence ID X_DroMel_CAF1
Location 13,179,976 – 13,180,073
Length 97
Max. P 0.884980
window8197

overview

Window 7

Location 13,179,976 – 13,180,073
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 98.56
Mean single sequence MFE -16.74
Consensus MFE -15.84
Energy contribution -16.04
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.95
SVM decision value 0.93
SVM RNA-class probability 0.884980
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13179976 97 + 22224390
UUUCUCUUGGCUAUUUGUGCAAGUCAUUCACAAAUACACAUAAAUAUCACUCAUACGUCACGUACGCCAGGUCAAUGUUGUACAGCCAAUUAAAAAC
......(((((((((((((.((....)))))))))..........................(((((.((......)).)))))))))))........ ( -18.40)
>DroSec_CAF1 9952 97 + 1
UUUCUCUCGGAUAUUUGUGCAAGUCAUUCACAAAUACACAUAAAUAUCACUCAUACGUCACGUACGCCAGGUCAAUGUUGUACAGCCAAUUAAAAAC
........((.((((((((.((....)))))))))).........................(((((.((......)).)))))..)).......... ( -13.70)
>DroSim_CAF1 10020 97 + 1
UUUCUCUCGGCUAUUUGUGCAAGUCAUUCACAAAUACACAUAAAUAUCACUCAUACGUCACGUACGCCAGGUCAAUGUUGUACAGCCAAUUAAAAAG
........(((((((((((.((....)))))))))..........................(((((.((......)).))))))))).......... ( -17.20)
>DroEre_CAF1 13898 97 + 1
UUUCUCUCGGCUAUUUGUGCAAGUCAUUCACAAAUACACAUAAAUAUCACUCAUACGUCACGUACGCCAGGUCAAUGUUGUACAGCCAAUUAAAAAC
........(((((((((((.((....)))))))))..........................(((((.((......)).))))))))).......... ( -17.20)
>DroYak_CAF1 15791 97 + 1
UUUCUCUCGGCUAUUUGUGCAAGUCAUUCACAAAUACACAUAAAUAUCACUCAUACGUCACGUACGCCAGGUCAAUGUUGUACAGCCAAUUAAAAAG
........(((((((((((.((....)))))))))..........................(((((.((......)).))))))))).......... ( -17.20)
>consensus
UUUCUCUCGGCUAUUUGUGCAAGUCAUUCACAAAUACACAUAAAUAUCACUCAUACGUCACGUACGCCAGGUCAAUGUUGUACAGCCAAUUAAAAAC
........(((((((((((.((....)))))))))..........................(((((.((......)).))))))))).......... (-15.84 = -16.04 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:39 2006