| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,177,958 – 13,178,070 |
| Length | 112 |
| Max. P | 0.678039 |
| Location | 13,177,958 – 13,178,070 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 73.68 |
| Mean single sequence MFE | -18.00 |
| Consensus MFE | -14.65 |
| Energy contribution | -14.10 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.21 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.678039 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13177958 112 + 22224390 UAGUUACGUAUACGUAAUAUGUGUUAUAAUCAUACAUUAACUUGCUU--AAAAUCACUUGGUGGCUUUAAAAAAGCUUUAAGACUUGAGGCGUGCCUACUUUUUUAACAUCACC ..((((((....))))))((((((.......))))))..........--..........(((((..((((((((((((((.....))))))((....))))))))))..))))) ( -19.50) >DroSec_CAF1 7929 95 + 1 AAGUUACGCAUACGUAAUAUGUAUUACA-------------UUUUAUAAAGAAACACAUAGUGGGUUCCAAAAAGCUUUAAGAUUUAAGGUGUGCCUACUUUUUUAAC------ ..((((((....))))))..........-------------.....((((((.......(((((((........((((((.....))))))..)))))))))))))..------ ( -14.41) >DroSim_CAF1 8051 95 + 1 AAGUUACGUAUACGUAAUAUGUAUUAAA-------------UUGUAUAAAGAAUCACAAAGUGGGCUCAAAAACGCUUUAAGAUUUAAGGCUUGCCUACUUUUUUAAC------ ..((((((....)))))).(((((....-------------..))))).........(((((((((........((((((.....))))))..)))))))))......------ ( -20.10) >consensus AAGUUACGUAUACGUAAUAUGUAUUAAA_____________UUGUAUAAAGAAUCACAUAGUGGGUUCAAAAAAGCUUUAAGAUUUAAGGCGUGCCUACUUUUUUAAC______ ..((((((....)))))).........................................(((((((........((((((.....))))))..))))))).............. (-14.65 = -14.10 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:35 2006