Locus 5033

Sequence ID X_DroMel_CAF1
Location 13,177,219 – 13,177,329
Length 110
Max. P 0.832664
window8192

overview

Window 2

Location 13,177,219 – 13,177,329
Length 110
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 82.07
Mean single sequence MFE -47.07
Consensus MFE -33.53
Energy contribution -34.02
Covariance contribution 0.50
Combinations/Pair 1.06
Mean z-score -1.92
Structure conservation index 0.71
SVM decision value 0.72
SVM RNA-class probability 0.832664
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13177219 110 - 22224390
UCUCUGGCCGCACGGCCAUGGCUGCAAUGGCGGCAAUGCAUUGCAAUGGC--CUGGCCUGGCUGGUCUGCAGGAGGCCCAGAUUGAAUCGCUGGCUUUUUGGCAAGGGCCAA
((((.((((((..(((((.((((((((((.((....))))))))...)))--))))))..)).)))).).))).(((((.(((...)))((..(....)..))..))))).. ( -46.70)
>DroSec_CAF1 7221 93 - 1
UCUCUGGCCGGACGGCCGUGGC---------UGCAA----------UGGCUGCUGGCCUGGCUGGUCUGCAGGAGGCCCAGAUUGAAUCGCUUGCUUUUUGGCAAGGGCCAA
.....((((((.(((((((...---------....)----------))))))))))))((((((((((.....)))))............((((((....))))))))))). ( -42.70)
>DroSim_CAF1 7336 102 - 1
UCUCUGGCCGGACGGCCAUGGCUGCACUGGCUGCAA----------UGGCUGCUGGCCUGGCUGGUCUGCAGGAGGCCCAGAUUGAAUCGCUGGCUUUUUGGCAAGGGCCAA
.....((((((.(((((((.((.((....)).)).)----------))))))))))))....((((((.(((((((((..(((...)))...)))))))))....)))))). ( -47.80)
>DroEre_CAF1 11293 107 - 1
UCACUGGCCGGAUGGCCAUGGCUGCCAUGGCUGCCCUGG-CUGCCCUGG---CUGCCCUGGCUGG-CUGCAGCAGGCCCAGAUUGAAUCGCUGGCUUUUUGGCAAGGGCCAA
.....((((....(((((.(((.((((.(((.((....)-).))).)))---).))).)))))))-))......(((((.(((...)))((..(....)..))..))))).. ( -51.10)
>consensus
UCUCUGGCCGGACGGCCAUGGCUGCAAUGGCUGCAA__________UGGC__CUGGCCUGGCUGGUCUGCAGGAGGCCCAGAUUGAAUCGCUGGCUUUUUGGCAAGGGCCAA
....(((((...((((((..((.((....)).)).............(((.....)))))))))...(((((((((((..(((...)))...)))))))).)))..))))). (-33.53 = -34.02 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:35 2006