Locus 5032

Sequence ID X_DroMel_CAF1
Location 13,167,384 – 13,167,492
Length 108
Max. P 0.943412
window8191

overview

Window 1

Location 13,167,384 – 13,167,492
Length 108
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 73.86
Mean single sequence MFE -31.80
Consensus MFE -20.88
Energy contribution -20.78
Covariance contribution -0.10
Combinations/Pair 1.17
Mean z-score -1.71
Structure conservation index 0.66
SVM decision value 1.33
SVM RNA-class probability 0.943412
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13167384 108 + 22224390
CGGUGACGGUU-----GACUCUCUAUUGAGGGCGUUGCAAAUGUCAUUGUCGGUGACUUUCGAUGGCUGUGAUUCGAAUUCACAUAGCCAUUUCCAAUU------CCCGGGUCCAGAUC
((....))...-----(((((((....))(((.((((.....(((((.....)))))....((((((((((...........))))))))))..)))).------))))))))...... ( -33.00)
>DroEre_CAF1 2340 104 + 1
CA---ACGGUUUCAAUAUGCCUCUAUUGAGGGCGUUGCAAAUGUCAUUGUCGUUGACUUUCAAUGGCUGUGAUUCCAAUUGCAAGUCCC------------CCAUUAGGAGUCCAGAUC
..---..(((........)))((((.((.(((..((((((..(((((.(((((((.....))))))).))))).....))))))..)))------------.)).)))).......... ( -30.70)
>DroYak_CAF1 2357 116 + 1
CA---ACGGUUACAAUGUGCCUCCAUUGAGGGCGUUGCAAAUGUCAUUGUCGGUGACUUUCAAUGGCUGUGAUUCCACUUGCAACUCCCAUUUCCUAUUUUCCAUUUCGAGUCCAGAUC
..---..((...(((((......))))).(((.(((((((..(((((((..(....)...))))))).(((....)))))))))).)))............))................ ( -31.70)
>consensus
CA___ACGGUU_CAAUGUGCCUCUAUUGAGGGCGUUGCAAAUGUCAUUGUCGGUGACUUUCAAUGGCUGUGAUUCCAAUUGCAACUCCCAUUUCC_AUU__CCAUUACGAGUCCAGAUC
.......(((........))).((((((((((((((((((......))).))))).))))))))))(((.((((((...............................)))))))))... (-20.88 = -20.78 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:34 2006