Locus 5031

Sequence ID X_DroMel_CAF1
Location 13,166,797 – 13,166,893
Length 96
Max. P 0.795610
window8190

overview

Window 0

Location 13,166,797 – 13,166,893
Length 96
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 77.59
Mean single sequence MFE -32.40
Consensus MFE -17.97
Energy contribution -17.97
Covariance contribution 0.01
Combinations/Pair 1.12
Mean z-score -2.28
Structure conservation index 0.55
SVM decision value 0.60
SVM RNA-class probability 0.795610
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13166797 96 - 22224390
CGUUGGCA-ACGGGCGCAAUUAGCAGACUGAUAAUGAUAAUGGCGCGAGCCCAAUGUGGUCGCUAUGAGCCAUCCAAGUCGGUUAUGCCCGGCCGAU
.((((((.-.(((((((.....)).(((((((.........(((....))).....(((..((.....))...))).)))))))..))))))))))) ( -36.20)
>DroEre_CAF1 1735 97 - 1
AGUGGGCAAACAGGCGCAAUUAGCAGACUGAUAAUGAUAAUGGCGCGCACCCAAUGUGGCCACUAUGAGCCCAUCAAGUCGGCUAUGCCCCGACGAU
.((((((...(((..((.....))...)))....(.(((.((((.((((.....)))))))).))).)))))))...(((((.......)))))... ( -32.10)
>DroYak_CAF1 1715 77 - 1
------------GGCGCAAUUAGCAGACUGAUAAUGAUAAUGGC-------CACUAUGGCCGCUAUGAGC-CAUCAAGUCGGCUAUGCCCCGCCGAU
------------((((....((((.(((((((..(.(((.((((-------(.....))))).))).)..-.))).)))).)))).....))))... ( -28.90)
>consensus
_GU_GGCA_AC_GGCGCAAUUAGCAGACUGAUAAUGAUAAUGGCGCG__CCCAAUGUGGCCGCUAUGAGCCCAUCAAGUCGGCUAUGCCCCGCCGAU
............((.(((..((((.(((((((..(.(((.((((..............)))).))).)....))).)))).)))))))))....... (-17.97 = -17.97 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:33 2006