Locus 5029

Sequence ID X_DroMel_CAF1
Location 13,164,413 – 13,164,507
Length 94
Max. P 0.896388
window8187

overview

Window 7

Location 13,164,413 – 13,164,507
Length 94
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.81
Mean single sequence MFE -23.52
Consensus MFE -20.18
Energy contribution -20.30
Covariance contribution 0.12
Combinations/Pair 1.12
Mean z-score -1.84
Structure conservation index 0.86
SVM decision value 0.99
SVM RNA-class probability 0.896388
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13164413 94 + 22224390
GCUU-----------------UUCUACU---------CUCCUCUUUGAUCUUUCCAGUUUGUGGCGAAAUAUCUGGAAGUCAAGGGUAAUUGCCCUUAAUCGUUAGUAAUUGCCGCCAUU
((..-----------------.......---------......((((((..((((((..(((......))).))))))))))))(((((((((............))))))))))).... ( -21.50)
>DroSec_CAF1 25790 94 + 1
GCUU-----------------UUCUACU---------CUCCUCUUUGAUCUUUCCAGUUUGUGGCGAAACAUCUGGAAGUCAAGGGUAAUUGCCCUUAAUCGUUAGUAAUUGCCGCCAUU
((..-----------------.......---------......((((((..((((((..(((......))).))))))))))))(((((((((............))))))))))).... ( -23.40)
>DroSim_CAF1 20728 94 + 1
GCUU-----------------UUCUACU---------CUCCUCUUUGAUCUUUCCAGUUUGUGGCGAAACAUCUGGAAGUCAAGGGUAAUUGCCCUUAAUCGUUAGCAAUUGCCGCCAUU
((..-----------------.......---------......((((((..((((((..(((......))).))))))))))))(((((((((............))))))))))).... ( -25.40)
>DroEre_CAF1 26936 93 + 1
GCCU-----------------UUCUCCU---------CUCCUCUUUGAUCUUUCCAGUUUGUGGCGAAACAUCUGGAAGUCAAGGGUAAUUGCCCUUAAUCGUUAGUAAUUACCG-CAUU
((..-----------------.......---------......((((((..((((((..(((......))).))))))))))))(((((((((............))))))))))-)... ( -23.90)
>DroYak_CAF1 25690 119 + 1
GCUUGCACCCCUCUCUCCCCAUUCUCCUCUCUCCUUGCUCCUCUUUGAUCUCUCCAGUUGGCGGCGAAACAUCUGGAAGUCAAGGGUAAUUGCCCAUAAUCGUUAGUAAUUGCCG-CAUU
...(((.....................................(((((.((.(((((.((.........)).))))))))))))(((((((((............))))))))))-)).. ( -23.40)
>consensus
GCUU_________________UUCUACU_________CUCCUCUUUGAUCUUUCCAGUUUGUGGCGAAACAUCUGGAAGUCAAGGGUAAUUGCCCUUAAUCGUUAGUAAUUGCCGCCAUU
...........................................((((((..((((((..(((......))).))))))))))))(((((((((............)))))))))...... (-20.18 = -20.30 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:30 2006