| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,163,636 – 13,163,747 |
| Length | 111 |
| Max. P | 0.679793 |
| Location | 13,163,636 – 13,163,747 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 79.03 |
| Mean single sequence MFE | -40.38 |
| Consensus MFE | -23.75 |
| Energy contribution | -23.97 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.679793 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13163636 111 + 22224390 AGUUGAUAGAUGGCGCUUUAAGCACUUGCUAAAAAAUAUCGAUGAG-------CAGCGUUA-AUCGGCGCUGCCUAUCGCAAGCGGUAUCCGUGUUGCGGCAGCCCUGGUCGACCAGCA .((((((....(((((.....))...((((..........((((.(-------((((((..-....))))))).))))((((((((...)))).)))))))))))...))))))..... ( -41.10) >DroSec_CAF1 25031 99 + 1 AUUCGGUAGAUGGCGCUUUAAGCACUGGCCAG-AUUUAUCGAUGAG-------AAGCGGCA-AUCGGCGCUGCCUAUCGCAAGCGGCAUCCAUGUUGCGGCA-----------CCAGCA ..((((((((((((((.....))....)))).-.))))))))....-------..((.(((-((.((.(((((.........)))))..))..))))).)).-----------...... ( -29.60) >DroSim_CAF1 19944 110 + 1 AUUCGGUAGAUGGCGCUUUAAGCACUGGCCAU-AGACAUCGAUAAG-------CAGCGGCA-AUCGGCGCUGCCUAUCGCAAGCGGCAUCCAUGUUGCGGCAGCCCUGGUCGACCAGCA ....(((.((((((((.....))....(((..-......(((((.(-------(((((.(.-...).)))))).)))))...((((((....))))))))).)))...))).))).... ( -42.30) >DroEre_CAF1 26147 118 + 1 UGUCGGUAGAUGGCGCCUUAAGCACUCGCAAG-CAAUAUCGAUACGCAAGCAAUACCGAUUAAUCGGCGUUGCCUAACGCAAGCGGCAUCCAUGUUGCGGCAGCCCUGGUCUACCAGCG .((.(((((((((((((....((....))..(-((((((.(((.(((..((((..((((....))))..))))(....)...)))..))).)))))))))).)))...))))))).)). ( -47.30) >DroYak_CAF1 24921 107 + 1 AGUCGACAGAUGGCGCUUUAAGCACCCGCAAG-C--UAUCGAUAAG-------UGGCGCCU-AUCGGCGCUGCCUAUCGCAAGCGGCAUCCAUGUUGCGCCAGCCCUGGU-UACCAGCA .(.(((((((((.(((((..(((........)-)--)..(((((.(-------..(((((.-...)))))..).))))).))))).))))..))))))((((....))))-........ ( -41.60) >consensus AGUCGGUAGAUGGCGCUUUAAGCACUCGCAAG_AAAUAUCGAUAAG_______CAGCGGCA_AUCGGCGCUGCCUAUCGCAAGCGGCAUCCAUGUUGCGGCAGCCCUGGUCGACCAGCA ....(((((..(((((.....((....))..........((((...................)))))))))..)))))((..((((((....))))))((..((....))...)).)). (-23.75 = -23.97 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:29 2006